Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J90_RS15675 Genome accession   NZ_CP027731
Coordinates   3463808..3466033 (-) Length   741 a.a.
NCBI ID   WP_124420268.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-60-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458808..3471033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J90_RS15640 (C4J90_3147) murB 3459178..3460197 (-) 1020 WP_124420266.1 UDP-N-acetylmuramate dehydrogenase -
  C4J90_RS15645 (C4J90_3148) - 3460194..3460658 (-) 465 WP_124363253.1 low molecular weight protein-tyrosine-phosphatase -
  C4J90_RS15650 (C4J90_3149) kdsB 3460658..3461422 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J90_RS15655 (C4J90_3150) - 3461419..3461604 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J90_RS15660 (C4J90_3151) lpxK 3461628..3462638 (-) 1011 WP_124420267.1 tetraacyldisaccharide 4'-kinase -
  C4J90_RS15665 (C4J90_3152) - 3462638..3463066 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J90_RS15670 (C4J90_3153) exbB 3463063..3463698 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J90_RS15675 (C4J90_3154) comA 3463808..3466033 (-) 2226 WP_124420268.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J90_RS15680 (C4J90_3155) - 3466169..3466684 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J90_RS15685 (C4J90_3156) - 3466688..3468046 (-) 1359 WP_124414955.1 sensor histidine kinase -
  C4J90_RS15690 (C4J90_3157) - 3468033..3468761 (-) 729 WP_124420269.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80566.62 Da        Isoelectric Point: 10.8207

>NTDB_id=279576 C4J90_RS15675 WP_124420268.1 3463808..3466033(-) (comA) [Pseudomonas sp. R2-60-08W]
MRTGMFALALGLLTLRFLPVLPPIGWLLAMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWVEG
RVVGLPQQTDTGVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGLARYGCWPRNLPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLSLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLILLAVQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAVARGLPIRRVVGGETDGLPAFLGTEPCVSGERWDWDGVSFVLWQWSDALGGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279576 C4J90_RS15675 WP_124420268.1 3463808..3466033(-) (comA) [Pseudomonas sp. R2-60-08W]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGCTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCATCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTATTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAGCACTGGACGGCGAAACACGATGGGTGGAAGGG
CGCGTGGTCGGCTTGCCCCAGCAGACCGACACCGGCGTGCGTTTTGATCTGGCCGACAGCCGGTCGCGCAAAGCTCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGTGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGGGAGCGCCTCGCGCCAGCCCGCAACGCTCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCCGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGATGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTTATCTCCGGCCAACACATTGGCTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGCTGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCTTGGCCTTTGTCGC
AGCGTTGGGTTATGGCCTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTAATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGCGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCCCTG
GCCAGTTTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTGGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCTATCGGTTTGTTTCCGGTCCTGTTGGTGCTGAGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCCGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTCTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGATCCTGCTGGCGGTGCAGTTGCCGGCCTGGACGCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGCTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCCGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCTGTGATCTT
GCGCACCCGCAACCATGCCTTGCTTTACGATGCGGGGCCGCGTTCGGGGGCGGTCGACCTGGGCGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTACTGAGCCATGCCGACGCCGATCATGCCGGTGGCGCT
GCAGCTGTCGCTCGTGGGCTGCCCATCCGGCGTGTGGTCGGCGGCGAAACCGACGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTGTCAGTGGCGAGCGATGGGACTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCTGACGCCCTCGGTGGCA
ACGCCAAATCCTGTGTATTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCATTGCTTGACACACCGTTGGCGGTGCCCACTGACTGGTTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCCTTTGTGCAACGGCTTGCGCCTGGATCGGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CGCAGGTGGTGGAACGCTATCGGGCCCTGGGCAGCCGGTTATACGACAGCGCCGAGCAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCCGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

35.525

100

0.379

Multiple sequence alignment