Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J92_RS15730 Genome accession   NZ_CP027729
Coordinates   3444986..3447211 (-) Length   741 a.a.
NCBI ID   WP_124404527.1    Uniprot ID   -
Organism   Pseudomonas sp. R3-18-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439986..3452211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J92_RS15695 (C4J92_3141) murB 3440356..3441375 (-) 1020 WP_124404522.1 UDP-N-acetylmuramate dehydrogenase -
  C4J92_RS15700 (C4J92_3142) - 3441372..3441836 (-) 465 WP_124404523.1 low molecular weight protein-tyrosine-phosphatase -
  C4J92_RS15705 (C4J92_3143) kdsB 3441836..3442600 (-) 765 WP_124404524.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J92_RS15710 (C4J92_3144) - 3442597..3442782 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J92_RS15715 (C4J92_3145) lpxK 3442806..3443816 (-) 1011 WP_124404525.1 tetraacyldisaccharide 4'-kinase -
  C4J92_RS15720 (C4J92_3146) - 3443816..3444244 (-) 429 WP_124404526.1 biopolymer transporter ExbD -
  C4J92_RS15725 (C4J92_3147) exbB 3444241..3444876 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J92_RS15730 (C4J92_3148) comA 3444986..3447211 (-) 2226 WP_124404527.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J92_RS15735 (C4J92_3149) - 3447347..3447862 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J92_RS15740 (C4J92_3150) - 3447866..3449224 (-) 1359 WP_124404528.1 sensor histidine kinase -
  C4J92_RS15745 (C4J92_3151) - 3449211..3449939 (-) 729 WP_124404529.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80735.79 Da        Isoelectric Point: 10.8207

>NTDB_id=279528 C4J92_RS15730 WP_124404527.1 3444986..3447211(-) (comA) [Pseudomonas sp. R3-18-08]
MRTGMFALALGLLTLRFLPVLPPTGWLLAMLVLALMLVPFRTYPLAFFLLGLSWACISAQWALDDRLRPTLDGETRWVEG
RVVGLPQQTDTSVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFMAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPVVGDGLLWLASGALEGWFKVLALLAGQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQALILRTRNHALLYDAGPRSGTVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAVARGLPIRRVVGGETEGLPAFLGTEPCVSGERWDWDGVSFVLWQWSDALGGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRNSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279528 C4J92_RS15730 WP_124404527.1 3444986..3447211(-) (comA) [Pseudomonas sp. R3-18-08]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGCTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCACCGGATGGCT
GCTGGCCATGCTGGTGCTGGCATTGATGTTAGTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAACGCTGGACGGCGAAACGCGATGGGTGGAAGGG
CGTGTGGTCGGCTTGCCTCAGCAGACCGACACCAGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGTGGTCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTCGCGCCAGCCCGCAACGCTCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGATGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGCCAACACATTGGTTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATGGC
AGCGCTGGGTTATGGCCTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCCCTG
GCCAGCTTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTCGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTGTTTCCGGTCCTGCTGGTGCTGGGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCTGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGCTG
CTGGGCACGGCGCTGCTGTGGCTACCGGTGGTCGGTGACGGTTTGCTCTGGTTGGCCAGCGGGGCGCTGGAGGGATGGTT
CAAAGTGCTGGCCCTACTGGCCGGGCAGTTGCCGGCCTGGACTCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGTC
TGGCGGGCGCGGTGTTGCTGCTGCTGCCCAAGGGGGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCGGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACAGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCATTGATCTT
GCGCACTCGCAACCATGCGTTGCTTTACGATGCGGGGCCGCGTTCGGGGACAGTCGACCTGGGCGCGCGTGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGCGTAGAGCGGTTGGACATGTTGCTACTGAGCCATGCCGACGCCGATCATGCCGGTGGCGCT
GCAGCTGTCGCCCGTGGGCTGCCCATCCGGCGTGTGGTTGGCGGTGAAACCGAAGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTGTCAGTGGCGAACGATGGGACTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCTGACGCCCTCGGTGGCA
ACGCCAAATCCTGTGTATTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGAGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGACACACCGTTGGCGGTGCCCACCGATTGGCTGCAGGCGCCCCATCATGGTAGCCGCAACTCGTCATC
CAGGCCCTTTGTGCAACGGCTTGCGCCTGGATCGGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CTCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGTCGGCTATACGACAGCGCCGAGCAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCTGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

35.533

100

0.378

Multiple sequence alignment