Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C14_RS13135 Genome accession   NZ_CP032860
Coordinates   2518888..2519535 (+) Length   215 a.a.
NCBI ID   WP_038427552.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2513888..2524535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS13120 (D9C14_13120) glpD 2514059..2515726 (+) 1668 WP_038427549.1 glycerol-3-phosphate dehydrogenase -
  D9C14_RS13125 (D9C14_13125) pgcA 2515858..2517603 (+) 1746 WP_038427550.1 phosphoglucomutase -
  D9C14_RS13130 (D9C14_13130) yhcY 2517752..2518891 (+) 1140 WP_038427551.1 two-component system sensor histidine kinase YhcY -
  D9C14_RS13135 (D9C14_13135) vraR 2518888..2519535 (+) 648 WP_038427552.1 two-component system response regulator YhcZ Regulator
  D9C14_RS13140 (D9C14_13140) yhdA 2519532..2520056 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  D9C14_RS13145 (D9C14_13145) yhdB 2520071..2520313 (-) 243 WP_003233373.1 YhdB family protein -
  D9C14_RS13150 (D9C14_13150) yhdC 2520514..2520837 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  D9C14_RS13155 (D9C14_13155) lytF 2520879..2522345 (-) 1467 WP_019712924.1 peptidoglycan endopeptidase LytF -
  D9C14_RS13160 (D9C14_13160) nsrR 2522498..2522938 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24192.89 Da        Isoelectric Point: 6.5030

>NTDB_id=279490 D9C14_RS13135 WP_038427552.1 2518888..2519535(+) (vraR) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMLHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=279490 D9C14_RS13135 WP_038427552.1 2518888..2519535(+) (vraR) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCTCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.498

97.209

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment