Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C4J95_RS24090 | Genome accession | NZ_CP027726 |
| Coordinates | 5241686..5242201 (-) | Length | 171 a.a. |
| NCBI ID | WP_003232445.1 | Uniprot ID | A0A0W0N9K8 |
| Organism | Pseudomonas orientalis strain R4-35-08 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5236686..5247201
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J95_RS24065 (C4J95_4761) | - | 5237188..5238144 (+) | 957 | WP_124360013.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| C4J95_RS24070 (C4J95_4762) | - | 5238149..5238904 (-) | 756 | WP_124360014.1 | alpha/beta hydrolase family protein | - |
| C4J95_RS24075 (C4J95_4763) | - | 5238894..5240003 (-) | 1110 | WP_124360015.1 | DUF3182 family protein | - |
| C4J95_RS24080 (C4J95_4764) | - | 5240254..5240814 (+) | 561 | WP_124360016.1 | cysteine hydrolase family protein | - |
| C4J95_RS24085 (C4J95_4765) | tam | 5240831..5241592 (-) | 762 | WP_124360017.1 | trans-aconitate 2-methyltransferase | - |
| C4J95_RS24090 (C4J95_4766) | ssb | 5241686..5242201 (-) | 516 | WP_003232445.1 | single-stranded DNA-binding protein | Machinery gene |
| C4J95_RS24095 (C4J95_4767) | - | 5242211..5243605 (-) | 1395 | WP_124360018.1 | MFS transporter | - |
| C4J95_RS24100 (C4J95_4768) | uvrA | 5243784..5246618 (+) | 2835 | WP_124360019.1 | excinuclease ABC subunit UvrA | - |
| C4J95_RS24105 (C4J95_4769) | bfr | 5246685..5247149 (-) | 465 | WP_003176400.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19015.19 Da Isoelectric Point: 5.9455
>NTDB_id=279463 C4J95_RS24090 WP_003232445.1 5241686..5242201(-) (ssb) [Pseudomonas orientalis strain R4-35-08]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=279463 C4J95_RS24090 WP_003232445.1 5241686..5242201(-) (ssb) [Pseudomonas orientalis strain R4-35-08]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGCCCGCAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCGCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCGCCGCGCCCGCAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCGCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.659 |
100 |
0.614 |
| ssb | Glaesserella parasuis strain SC1401 |
45.833 |
100 |
0.515 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
46.023 |
100 |
0.474 |