Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J95_RS23285 Genome accession   NZ_CP027726
Coordinates   5080948..5082315 (-) Length   455 a.a.
NCBI ID   WP_124359893.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R4-35-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5075948..5087315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J95_RS23270 (C4J95_4607) yjiA 5077250..5078218 (-) 969 WP_124359891.1 GTPase -
  C4J95_RS23275 (C4J95_4608) - 5078373..5078570 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  C4J95_RS23280 (C4J95_4609) - 5078586..5080652 (-) 2067 WP_124359892.1 carbon starvation CstA family protein -
  C4J95_RS23285 (C4J95_4610) radA 5080948..5082315 (-) 1368 WP_124359893.1 DNA repair protein RadA Machinery gene
  C4J95_RS23290 (C4J95_4611) - 5082351..5082899 (-) 549 WP_124359894.1 ankyrin repeat domain-containing protein -
  C4J95_RS23295 (C4J95_4612) katB 5083038..5084579 (-) 1542 WP_124359895.1 catalase KatB -
  C4J95_RS23300 (C4J95_4613) mscL 5084867..5085283 (+) 417 WP_057724964.1 large-conductance mechanosensitive channel protein MscL -
  C4J95_RS23305 (C4J95_4614) - 5085325..5086101 (-) 777 WP_124359896.1 ferredoxin--NADP reductase -
  C4J95_RS23310 (C4J95_4615) - 5086529..5087239 (+) 711 WP_124359897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48717.25 Da        Isoelectric Point: 6.8987

>NTDB_id=279462 C4J95_RS23285 WP_124359893.1 5080948..5082315(-) (radA) [Pseudomonas orientalis strain R4-35-08]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVSRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279462 C4J95_RS23285 WP_124359893.1 5080948..5082315(-) (radA) [Pseudomonas orientalis strain R4-35-08]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTTACTGAAACCATGATTGAAAGCGGTGGCGCCGCAGCCCCCACCGGTCGCGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTTGAAGAGATCCCGCGTTTCTCCACGGCTTCCGGCGAGCTG
GACCGGGTCTTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGTAAATCCACGAT
CCTGCTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAGTCCCAGCAACAGGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATTGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACTGAGCAACTGCAATCAGCGCC
TGGCGGCGTATCCCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAACATATGGTGGATACCGTGCTGTATTTCGAG
GGTGAGTCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAGTTGGGTGTATTTGC
CATGACTGACAGGGGGCTCAAAGAAGTCTCCAACCCGTCGGCGATCTTTCTCACCCGCGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCACGGCGCGTAACCTTGGGGCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTGTTGCATCGTCATGGTGGCAT
TCCGACTCACGATCAAGACGTTTTCCTCAACGTGGTGGGCGGGGTCAAGGTATTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACAAACCGTTGCCCCACGACCTGCTGGTGTTTGGCGAAGTCGGCCTGTCCGGC
GAAGTCCGCCCGGTTCCCAGCGGCCAGGAACGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCTCCCGCCTGGAACAAGCGTTGGATGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment