Detailed information NTG0279449

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J95_RS04020
• Genome accession: NZ_CP027726
• Coordinates: 918478..919344 (-)
• Length: 288 a.a.
• NCBI ID: WP_124356998.1
• Uniprot ID: -
• Organism: Pseudomonas orientalis strain R4-35-08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 913478..924344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J95_RS03980	-	913874..914120 (-)	247	Protein_763	ParA family protein	-
C4J95_RS03985 (C4J95_0795)	-	914351..915649 (-)	1299	WP_124356993.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J95_RS03990 (C4J95_0796)	-	915710..915883 (-)	174	WP_124356994.1	DUF3094 family protein	-
C4J95_RS03995 (C4J95_0797)	-	915937..916566 (-)	630	WP_124356995.1	DUF1780 domain-containing protein	-
C4J95_RS04000 (C4J95_0798)	-	916696..917385 (+)	690	WP_124356996.1	energy-coupling factor ABC transporter permease	-
C4J95_RS04005 (C4J95_0799)	-	917449..917664 (+)	216	WP_003171680.1	hypothetical protein	-
C4J95_RS04010 (C4J95_0800)	yacG	917661..917861 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
C4J95_RS04015 (C4J95_0801)	coaE	917858..918481 (-)	624	WP_124356997.1	dephospho-CoA kinase	-
C4J95_RS04020 (C4J95_0802)	pilD	918478..919344 (-)	867	WP_124356998.1	prepilin peptidase	Machinery gene
C4J95_RS04025 (C4J95_0803)	pilC	919341..920549 (-)	1209	WP_124356999.1	type II secretion system F family protein	Machinery gene
C4J95_RS04030 (C4J95_0804)	-	920748..921161 (+)	414	WP_124360463.1	pilin	-
C4J95_RS04040 (C4J95_0806)	-	921490..921795 (+)	306	WP_124357000.1	DUF6388 family protein	-
C4J95_RS04045 (C4J95_0807)	nadC	921916..922764 (-)	849	WP_124357001.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31765.10 Da
• Isoelectric Point: 8.1698

>NTDB_id=279449 C4J95_RS04020 WP_124356998.1 918478..919344(-) (pilD) [Pseudomonas orientalis strain R4-35-08]
MSALLGEQPWAFVGMALMLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPGAPVGPVYNLMRPNSCCPHCDQPIRPW
ENIPLLSYLMLKGRCTHCRATISARYPLTELACALISATVAWHFGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLILNSLGLLATLPDALWGAVLGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLF
AGLLLMRWRKTQVSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279449 C4J95_RS04020 WP_124356998.1 918478..919344(-) (pilD) [Pseudomonas orientalis strain R4-35-08]
TTGAGCGCGTTGCTGGGCGAGCAGCCCTGGGCGTTTGTCGGCATGGCGCTGATGCTGGGCCTGATCGTCGGCAGTTTTCT
CAATGTGCTGGTATGGCGCCTGCCCAAGATGCTCGAGCGCGAATGGCGCGCCCAGGCCCATGAGATCCTCGGCCTGCCTG
GCGCACCCGTGGGGCCGGTCTATAACCTGATGCGCCCTAACTCATGCTGCCCGCACTGCGACCAGCCGATTCGCCCCTGG
GAAAATATCCCCCTGCTCAGCTACCTGATGCTCAAGGGTCGTTGCACCCATTGCCGTGCAACCATCAGCGCGCGCTATCC
CCTCACCGAACTGGCCTGTGCGCTGATATCCGCCACCGTCGCCTGGCACTTCGGTTTTGGCTGGCAGGCGGGCGCGGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGACGTGGATCACCAGCTGCTGCCGGATGCCCTGGTGCTGCCG
CTGCTATGGCTGGGACTTATCCTCAACAGCCTGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCGGTGCTCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGATACTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCTTGTTT
GCCGGGCTGCTGCTGATGCGCTGGCGCAAGACGCAGGTGTCGACACCAATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.597	96.528	0.517
pilD	Vibrio campbellii strain DS40M4	48.754	97.569	0.476
pilD	Neisseria gonorrhoeae MS11	47.778	93.75	0.448
pilD	Acinetobacter nosocomialis M2	45.421	94.792	0.431
pilD	Acinetobacter baumannii D1279779	45.421	94.792	0.431