Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4J96_RS25360 Genome accession   NZ_CP027725
Coordinates   5535176..5535583 (-) Length   135 a.a.
NCBI ID   WP_065885361.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R2-66-08W     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5530176..5540583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J96_RS25345 (C4J96_5067) - 5532180..5534231 (-) 2052 WP_124360179.1 methyl-accepting chemotaxis protein -
  C4J96_RS25350 (C4J96_5068) - 5534228..5534752 (-) 525 WP_124427785.1 chemotaxis protein CheW -
  C4J96_RS25355 (C4J96_5069) pilH 5534765..5535130 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  C4J96_RS25360 (C4J96_5070) pilG 5535176..5535583 (-) 408 WP_065885361.1 twitching motility response regulator PilG Regulator
  C4J96_RS25365 (C4J96_5071) gshB 5535823..5536776 (+) 954 WP_124360181.1 glutathione synthase -
  C4J96_RS25370 (C4J96_5072) - 5536854..5537759 (+) 906 WP_124427786.1 energy transducer TonB -
  C4J96_RS25375 (C4J96_5073) - 5537953..5538522 (+) 570 WP_124360183.1 YqgE/AlgH family protein -
  C4J96_RS25380 (C4J96_5074) ruvX 5538522..5538959 (+) 438 WP_092231117.1 Holliday junction resolvase RuvX -
  C4J96_RS25385 (C4J96_5075) pyrR 5539114..5539620 (+) 507 WP_124360184.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14950.42 Da        Isoelectric Point: 7.3845

>NTDB_id=279441 C4J96_RS25360 WP_065885361.1 5535176..5535583(-) (pilG) [Pseudomonas orientalis strain R2-66-08W]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSRDGLFDKAKGRTVGVDQFLTKPFSKEELLGAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279441 C4J96_RS25360 WP_065885361.1 5535176..5535583(-) (pilG) [Pseudomonas orientalis strain R2-66-08W]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGCACCGCCGAGACGCTGTT
GAAAAACGTGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATCGTGGATCATCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCCCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAGGGACGGCCTGTTCGACAAGGCCAAGGGGCGTACCGTGGGGGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTATGTGCCTGCCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.291

94.074

0.652

Multiple sequence alignment