Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECSMS35_RS13915 Genome accession   NC_010498
Coordinates   2831115..2831852 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli SMS-3-5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826115..2836852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSMS35_RS13900 (EcSMS35_2746) clpC 2826569..2829142 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECSMS35_RS13905 (EcSMS35_2747) yfiH 2829272..2830003 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  ECSMS35_RS13910 (EcSMS35_2748) rluD 2830000..2830980 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECSMS35_RS13915 (EcSMS35_2749) comL 2831115..2831852 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECSMS35_RS13925 (EcSMS35_2750) raiA 2832123..2832464 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECSMS35_RS28865 pheL 2832568..2832615 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECSMS35_RS13930 (EcSMS35_2751) pheA 2832714..2833874 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECSMS35_RS13935 (EcSMS35_2752) tyrA 2833917..2835038 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECSMS35_RS13940 (EcSMS35_2753) aroF 2835049..2836119 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECSMS35_RS13945 (EcSMS35_2754) yfiL 2836329..2836694 (+) 366 WP_001353010.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=27944 ECSMS35_RS13915 WP_000197686.1 2831115..2831852(+) (comL) [Escherichia coli SMS-3-5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=27944 ECSMS35_RS13915 WP_000197686.1 2831115..2831852(+) (comL) [Escherichia coli SMS-3-5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376