Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J96_RS15420 Genome accession   NZ_CP027725
Coordinates   3431611..3433836 (-) Length   741 a.a.
NCBI ID   WP_124358868.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R2-66-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3426611..3438836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J96_RS15385 (C4J96_3077) murB 3426980..3427999 (-) 1020 WP_124426963.1 UDP-N-acetylmuramate dehydrogenase -
  C4J96_RS15390 (C4J96_3078) - 3427996..3428460 (-) 465 WP_124426964.1 low molecular weight protein-tyrosine-phosphatase -
  C4J96_RS15395 (C4J96_3079) kdsB 3428460..3429224 (-) 765 WP_065933892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J96_RS15400 (C4J96_3080) - 3429221..3429406 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J96_RS15405 (C4J96_3081) lpxK 3429431..3430441 (-) 1011 WP_124426965.1 tetraacyldisaccharide 4'-kinase -
  C4J96_RS15410 (C4J96_3082) - 3430441..3430869 (-) 429 WP_124358867.1 ExbD/TolR family protein -
  C4J96_RS15415 (C4J96_3083) exbB 3430866..3431501 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J96_RS15420 (C4J96_3084) comA 3431611..3433836 (-) 2226 WP_124358868.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J96_RS15425 (C4J96_3085) - 3433971..3434486 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  C4J96_RS15430 (C4J96_3086) - 3434490..3435848 (-) 1359 WP_124426966.1 sensor histidine kinase -
  C4J96_RS15435 (C4J96_3087) - 3435835..3436563 (-) 729 WP_124358871.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80976.02 Da        Isoelectric Point: 10.9240

>NTDB_id=279432 C4J96_RS15420 WP_124358868.1 3431611..3433836(-) (comA) [Pseudomonas orientalis strain R2-66-08W]
MRTGMFTLALGLLTLRLLPALPPTGWLLAMLVLALMLLPFRTYPLAFFLVGLSWACISAQWALDERLRPALDGETRWLEG
RVVGLPQQTDTGVRFELADSRSRKTRLPKRIRVSWHGGPPVRSGERWRLAVTLRRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNAWRDSLRQRLMASDAQTHEAALAALVLGDGSGLRAEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRKLPWLPWACGLAFVAALGYGLLAGFGVPVQRACMMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAVGLFPLLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWAPLAGDGLLWLAGGALEGWFKMLALMAGQLPAWTPTQVPLAYWLVSLVGAVMLLLPKGVPFRLLGWPLLLLAV
FPPRESVPHGQVMVVQLDVGQGQALILRTRHHALLYDAGPRSGSVDLGARVVVPALKTFGIARLDMLLLSHADADHAGGA
AAIARGLPIRRVVGGETEGLPAFLGAEPCRSGERWEWDGVAFTLWQWSDAVEGNPKSCVLQVQANGERLLLTGDIDSAAE
RALLDTPLAVPTDWLQVPHHGSRSSSSWPFVQRLAPRSVLISRGRGNAFGHPHSQVVQRYQAQGSQIYDSAEHGAVRFQL
GAFQPAIVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279432 C4J96_RS15420 WP_124358868.1 3431611..3433836(-) (comA) [Pseudomonas orientalis strain R2-66-08W]
ATGAGGACAGGGATGTTCACGTTGGCACTGGGGTTGCTGACCCTGCGCCTGCTTCCGGCGTTGCCGCCTACCGGATGGCT
GCTGGCCATGCTGGTGTTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCGTTGGCGTTTTTCCTGGTGGGTTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCCCTGGATGAGCGATTGCGACCGGCGCTGGACGGCGAGACGCGTTGGCTGGAGGGG
CGTGTGGTCGGGTTGCCGCAACAGACGGACACCGGCGTGCGCTTTGAACTGGCCGACAGCCGGTCGCGCAAAACCCGGCT
GCCCAAACGCATCCGTGTGTCCTGGCACGGCGGGCCGCCGGTGCGCAGTGGGGAACGCTGGCGCTTGGCTGTCACGCTCA
GGCGGCCGTCCGGCCTGCTCAATTTCCATGGCTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGGGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTGGCGCCGGCCCGCAACGCATGGCGCGACAGCCTGCGCCAACGCCTGATGGCCAGCGA
TGCGCAAACCCATGAAGCGGCGCTGGCGGCGCTGGTGCTGGGTGACGGTTCCGGGCTTCGAGCGGAGCAATGGCAAGTGT
TGCAAGACACCGGCACCGTGCACCTGCTGGTCATTTCCGGCCAACACATTGGCTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCTGGGATGGCACGTTACGGTTGCTGGCCGCGCAAACTGCCATGGCTGCCTTGGGCCTGCGGCCTGGCCTTTGTCGC
AGCGCTGGGCTATGGCCTGCTGGCGGGGTTCGGCGTACCGGTGCAGCGGGCCTGCATGATGGTCGGGTTGGTGTTGCTGT
GGCGGCTGCGCTTTCGGCATCTGGGCGCGTGGTGGCCGCTATTGCTGGCGTTCAACGGTGTATTGCTGCTTGAGCCCCTG
GCCAGTCTGCAGCCGGGCTTCTGGTTGTCATTCGCGGCGGTTGCGATTCTGGTTCTGACGTTCGGCGGGCGGCTGGGACC
CTGGAGTGTCTGGCAGGCATGGACGCGTCCCCAGTGGCTGATTGCCGTCGGTTTGTTTCCACTGCTGCTGGTGCTGGGTT
TGCCCATCAGCCTCACTGCACCGGTGGCCAATTTGTTCGCCGTGCCCTGGATCAGTCTGGTGGTGTTGCCTTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGCGCCGTTGGCCGGTGACGGCCTGCTCTGGTTGGCCGGCGGGGCGTTGGAGGGGTGGTT
CAAGATGCTGGCCCTGATGGCCGGGCAGTTGCCGGCCTGGACGCCGACCCAGGTGCCGTTGGCGTATTGGCTGGTCAGCC
TGGTGGGCGCGGTGATGCTGCTGCTGCCCAAGGGGGTACCGTTTCGGTTGCTGGGCTGGCCCCTGCTGTTGCTGGCGGTA
TTTCCTCCCAGGGAGTCGGTACCCCACGGGCAGGTAATGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCGTTGATCCT
GCGCACCCGCCATCATGCCTTGCTTTACGATGCCGGGCCTCGTTCCGGGTCGGTCGATCTGGGCGCGCGCGTGGTGGTGC
CGGCGTTGAAAACGTTCGGGATAGCGCGGCTCGACATGCTGCTGCTAAGCCATGCCGACGCCGATCACGCCGGTGGCGCG
GCAGCTATTGCCCGTGGTTTGCCCATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGGTTACCGGCCTTTCTGGGGGCCGA
GCCGTGCAGGAGCGGGGAGCGGTGGGAGTGGGATGGTGTGGCATTCACGTTATGGCAGTGGTCTGACGCCGTAGAGGGCA
ATCCAAAATCCTGTGTGTTGCAGGTGCAGGCCAATGGCGAAAGGCTGCTGCTCACCGGCGATATCGACAGCGCGGCGGAG
CGCGCCTTGCTGGACACACCACTGGCGGTGCCAACCGATTGGCTGCAGGTGCCCCATCATGGCAGCCGCAGCTCATCATC
CTGGCCCTTTGTACAGCGGCTTGCGCCCAGGTCGGTGCTGATTTCCCGGGGGCGGGGCAACGCCTTCGGTCATCCCCATT
CGCAAGTGGTTCAGCGCTATCAGGCCCAGGGCAGCCAGATATACGACAGCGCCGAGCACGGGGCCGTGCGTTTTCAATTG
GGTGCCTTTCAGCCGGCCATTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.91

100

0.368

Multiple sequence alignment