Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J96_RS15415 Genome accession   NZ_CP027725
Coordinates   3430866..3431501 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain R2-66-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3425866..3436501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J96_RS15380 (C4J96_3076) - 3426238..3426909 (+) 672 WP_124358863.1 Bax inhibitor-1/YccA family protein -
  C4J96_RS15385 (C4J96_3077) murB 3426980..3427999 (-) 1020 WP_124426963.1 UDP-N-acetylmuramate dehydrogenase -
  C4J96_RS15390 (C4J96_3078) - 3427996..3428460 (-) 465 WP_124426964.1 low molecular weight protein-tyrosine-phosphatase -
  C4J96_RS15395 (C4J96_3079) kdsB 3428460..3429224 (-) 765 WP_065933892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J96_RS15400 (C4J96_3080) - 3429221..3429406 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J96_RS15405 (C4J96_3081) lpxK 3429431..3430441 (-) 1011 WP_124426965.1 tetraacyldisaccharide 4'-kinase -
  C4J96_RS15410 (C4J96_3082) - 3430441..3430869 (-) 429 WP_124358867.1 ExbD/TolR family protein -
  C4J96_RS15415 (C4J96_3083) exbB 3430866..3431501 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J96_RS15420 (C4J96_3084) comA 3431611..3433836 (-) 2226 WP_124358868.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J96_RS15425 (C4J96_3085) - 3433971..3434486 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  C4J96_RS15430 (C4J96_3086) - 3434490..3435848 (-) 1359 WP_124426966.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279431 C4J96_RS15415 WP_122676958.1 3430866..3431501(-) (exbB) [Pseudomonas orientalis strain R2-66-08W]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279431 C4J96_RS15415 WP_122676958.1 3430866..3431501(-) (exbB) [Pseudomonas orientalis strain R2-66-08W]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAGAAACTCAAGGAGCTGCGCGCCAATTCGCCGTTGGGTGAAATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTTGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGTATGACCACCAACGCCGCCGTGCTGGCCGGTGGTATTTCCAAGGCACTGATCACCACGGCC
GCAGGCCTGATGGTGGGCATCCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment