Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K11_RS08820 Genome accession   NZ_CP027722
Coordinates   1949705..1950340 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain C50     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1944705..1955340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K11_RS08800 (C4K11_1774) - 1944950..1945882 (+) 933 WP_124354696.1 ABC transporter ATP-binding protein -
  C4K11_RS08805 (C4K11_1775) - 1945879..1946658 (+) 780 WP_124354697.1 ABC transporter permease -
  C4K11_RS08810 (C4K11_1776) - 1946707..1947222 (-) 516 WP_124354698.1 DUF2062 domain-containing protein -
  C4K11_RS08815 (C4K11_1777) comA 1947371..1949602 (+) 2232 WP_124354699.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K11_RS08820 (C4K11_1778) exbB 1949705..1950340 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K11_RS08825 (C4K11_1779) - 1950337..1950765 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  C4K11_RS08830 (C4K11_1780) lpxK 1950765..1951775 (+) 1011 WP_063429110.1 tetraacyldisaccharide 4'-kinase -
  C4K11_RS08835 (C4K11_1781) - 1951799..1951984 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K11_RS08840 (C4K11_1782) kdsB 1951981..1952745 (+) 765 WP_028683135.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K11_RS08845 (C4K11_1783) - 1952745..1953209 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  C4K11_RS08850 (C4K11_1784) murB 1953206..1954225 (+) 1020 WP_103331299.1 UDP-N-acetylmuramate dehydrogenase -
  C4K11_RS08855 (C4K11_1785) - 1954474..1954944 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=279357 C4K11_RS08820 WP_009047817.1 1949705..1950340(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain C50]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279357 C4K11_RS08820 WP_009047817.1 1949705..1950340(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain C50]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGGACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment