Detailed information NTG0279356

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K11_RS08815
• Genome accession: NZ_CP027722
• Coordinates: 1947371..1949602 (+)
• Length: 743 a.a.
• NCBI ID: WP_124354699.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain C50
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1942371..1954602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K11_RS08790 (C4K11_1772)	-	1943492..1944151 (+)	660	WP_038580923.1	transglutaminase-like domain-containing protein	-
C4K11_RS08795 (C4K11_1773)	-	1944194..1944817 (+)	624	WP_053268525.1	glutathione S-transferase family protein	-
C4K11_RS08800 (C4K11_1774)	-	1944950..1945882 (+)	933	WP_124354696.1	ABC transporter ATP-binding protein	-
C4K11_RS08805 (C4K11_1775)	-	1945879..1946658 (+)	780	WP_124354697.1	ABC transporter permease	-
C4K11_RS08810 (C4K11_1776)	-	1946707..1947222 (-)	516	WP_124354698.1	DUF2062 domain-containing protein	-
C4K11_RS08815 (C4K11_1777)	comA	1947371..1949602 (+)	2232	WP_124354699.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K11_RS08820 (C4K11_1778)	exbB	1949705..1950340 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K11_RS08825 (C4K11_1779)	-	1950337..1950765 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
C4K11_RS08830 (C4K11_1780)	lpxK	1950765..1951775 (+)	1011	WP_063429110.1	tetraacyldisaccharide 4'-kinase	-
C4K11_RS08835 (C4K11_1781)	-	1951799..1951984 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K11_RS08840 (C4K11_1782)	kdsB	1951981..1952745 (+)	765	WP_028683135.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K11_RS08845 (C4K11_1783)	-	1952745..1953209 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K11_RS08850 (C4K11_1784)	murB	1953206..1954225 (+)	1020	WP_103331299.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81363.53 Da
• Isoelectric Point: 10.0461

>NTDB_id=279356 C4K11_RS08815 WP_124354699.1 1947371..1949602(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain C50]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACMSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLVWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIALWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLSAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDVLAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279356 C4K11_RS08815 WP_124354699.1 1947371..1949602(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain C50]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGCTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCATGAGCGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGTCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACAGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCATTCGCTTC
GGCCCTGGGTTACGGGTTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCGCCGGCCATAGCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTAGTGCTGC
CATCGTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGTCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGTCCTGGCGGAA
CGAGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCTTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACTGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622