Detailed information NTG0279289

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K14_RS28545
• Genome accession: NZ_CP027719
• Coordinates: 6259503..6260831 (+)
• Length: 442 a.a.
• NCBI ID: WP_038635209.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain P2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6254503..6265831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K14_RS28525 (C4K14_5777)	pgeF	6256002..6256727 (-)	726	WP_124314382.1	peptidoglycan editing factor PgeF	-
C4K14_RS28530 (C4K14_5778)	rluD	6256724..6257686 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K14_RS28535 (C4K14_5779)	-	6257839..6258861 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K14_RS28540 (C4K14_5780)	-	6258996..6259229 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K14_RS28545 (C4K14_5781)	pilR	6259503..6260831 (+)	1329	WP_038635209.1	sigma-54 dependent transcriptional regulator	Regulator
C4K14_RS28550 (C4K14_5782)	thiO	6260828..6261928 (-)	1101	WP_101283616.1	glycine oxidase ThiO	-
C4K14_RS28555 (C4K14_5783)	-	6261983..6262384 (-)	402	WP_009050937.1	type IV pilin protein	-
C4K14_RS28560 (C4K14_5784)	-	6262398..6265466 (-)	3069	WP_124314383.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48809.14 Da
• Isoelectric Point: 8.7216

>NTDB_id=279289 C4K14_RS28545 WP_038635209.1 6259503..6260831(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain P2]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGPLPESTPANPATGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279289 C4K14_RS28545 WP_038635209.1 6259503..6260831(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain P2]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGAATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.441	100	0.667
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455