Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K14_RS09000 Genome accession   NZ_CP027719
Coordinates   1983796..1984431 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain P2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978796..1989431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K14_RS08980 (C4K14_1814) - 1979041..1979973 (+) 933 WP_081362295.1 ABC transporter ATP-binding protein -
  C4K14_RS08985 (C4K14_1815) - 1979970..1980749 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K14_RS08990 (C4K14_1816) - 1980798..1981313 (-) 516 WP_009047815.1 DUF2062 domain-containing protein -
  C4K14_RS08995 (C4K14_1817) comA 1981462..1983693 (+) 2232 WP_124312961.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K14_RS09000 (C4K14_1818) exbB 1983796..1984431 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K14_RS09005 (C4K14_1819) - 1984428..1984856 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K14_RS09010 (C4K14_1820) lpxK 1984856..1985866 (+) 1011 WP_124310676.1 tetraacyldisaccharide 4'-kinase -
  C4K14_RS09015 (C4K14_1821) - 1985890..1986075 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K14_RS09020 (C4K14_1822) kdsB 1986072..1986836 (+) 765 WP_124310677.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K14_RS09025 (C4K14_1823) - 1986836..1987300 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  C4K14_RS09030 (C4K14_1824) murB 1987297..1988316 (+) 1020 WP_124312962.1 UDP-N-acetylmuramate dehydrogenase -
  C4K14_RS09035 (C4K14_1825) - 1988565..1989035 (+) 471 WP_041987222.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=279280 C4K14_RS09000 WP_009047817.1 1983796..1984431(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain P2]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279280 C4K14_RS09000 WP_009047817.1 1983796..1984431(+) (exbB) [Pseudomonas chlororaphis subsp. aureofaciens strain P2]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACTCCGCCGCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGATA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAGGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCTGCCATGGCGCCGTTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCTGGTCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment