Detailed information NTG0279280

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C12_RS03050
• Genome accession: NZ_CP032857
• Coordinates: 580886..582007 (+)
• Length: 373 a.a.
• NCBI ID: WP_069837225.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain 2RL2-3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 575886..587007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C12_RS03025 (D9C12_03025)	ycdA	575900..576919 (-)	1020	WP_069837224.1	DUF4352 domain-containing protein	-
D9C12_RS03030 (D9C12_03030)	-	576978..577109 (-)	132	WP_003246334.1	hypothetical protein	-
D9C12_RS03035 (D9C12_03035)	ycdB	577283..578704 (+)	1422	WP_041335264.1	YcdB/YcdC domain-containing protein	-
D9C12_RS03040 (D9C12_03040)	ycdC	578891..580252 (+)	1362	WP_026113616.1	YcdB/YcdC domain-containing protein	-
D9C12_RS03045 (D9C12_03045)	cwlK	580260..580763 (-)	504	WP_046380766.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
D9C12_RS03050 (D9C12_03050)	rapF	580886..582007 (+)	1122	WP_069837225.1	response regulator aspartate phosphatase RapJ	Regulator
D9C12_RS03055 (D9C12_03055)	ycdF	582114..582890 (+)	777	WP_014478742.1	SDR family oxidoreductase	-
D9C12_RS03060 (D9C12_03060)	ycdG	582914..584599 (+)	1686	WP_031600124.1	alpha-glucosidase	-
D9C12_RS03065 (D9C12_03065)	znuA	584786..585745 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
D9C12_RS03070 (D9C12_03070)	znuC	585800..586495 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44354.20 Da
• Isoelectric Point: 4.8344

>NTDB_id=279280 D9C12_RS03050 WP_069837225.1 580886..582007(+) (rapF) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAAEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLLNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=279280 D9C12_RS03050 WP_069837225.1 580886..582007(+) (rapF) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAGCTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGACTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGCAGAGGCGTATGATCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAACTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGCTGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (219-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405