Detailed information NTG0279279

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K14_RS08995
• Genome accession: NZ_CP027719
• Coordinates: 1981462..1983693 (+)
• Length: 743 a.a.
• NCBI ID: WP_124312961.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain P2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1976462..1988693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K14_RS08970 (C4K14_1812)	-	1977583..1978242 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K14_RS08975 (C4K14_1813)	-	1978285..1978908 (+)	624	WP_124312960.1	glutathione S-transferase	-
C4K14_RS08980 (C4K14_1814)	-	1979041..1979973 (+)	933	WP_081362295.1	ABC transporter ATP-binding protein	-
C4K14_RS08985 (C4K14_1815)	-	1979970..1980749 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K14_RS08990 (C4K14_1816)	-	1980798..1981313 (-)	516	WP_009047815.1	DUF2062 domain-containing protein	-
C4K14_RS08995 (C4K14_1817)	comA	1981462..1983693 (+)	2232	WP_124312961.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K14_RS09000 (C4K14_1818)	exbB	1983796..1984431 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K14_RS09005 (C4K14_1819)	-	1984428..1984856 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K14_RS09010 (C4K14_1820)	lpxK	1984856..1985866 (+)	1011	WP_124310676.1	tetraacyldisaccharide 4'-kinase	-
C4K14_RS09015 (C4K14_1821)	-	1985890..1986075 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K14_RS09020 (C4K14_1822)	kdsB	1986072..1986836 (+)	765	WP_124310677.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K14_RS09025 (C4K14_1823)	-	1986836..1987300 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K14_RS09030 (C4K14_1824)	murB	1987297..1988316 (+)	1020	WP_124312962.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81312.42 Da
• Isoelectric Point: 9.9467

>NTDB_id=279279 C4K14_RS08995 WP_124312961.1 1981462..1983693(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain P2]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GSYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279279 C4K14_RS08995 WP_124312961.1 1981462..1983693(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain P2]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGTTGTTGATGGTG
TTTCCGCCGAAAAACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTACGACGCCGGCCCGCGTTTGGGTGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCGTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCC
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGTGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGCGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTAAGGTTGATGCTG
GGCAGCTACACCGAACCGACGAGCCTGAGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626