Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D9C11_RS22790 Genome accession   NZ_CP032855
Coordinates   4215816..4217591 (-) Length   591 a.a.
NCBI ID   WP_121591915.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4210816..4222591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS22770 (D9C11_22770) desE 4211211..4212269 (+) 1059 WP_121548879.1 fatty acid desaturase DesE -
  D9C11_RS22775 (D9C11_22775) desK 4212389..4213501 (+) 1113 WP_121548881.1 two-component sensor histidine kinase DesK -
  D9C11_RS22780 (D9C11_22780) desR 4213520..4214119 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  D9C11_RS22785 (D9C11_22785) walN 4214717..4215580 (-) 864 WP_041339842.1 3D domain-containing protein -
  D9C11_RS22790 (D9C11_22790) recQ 4215816..4217591 (-) 1776 WP_121591915.1 DNA helicase RecQ Machinery gene
  D9C11_RS22805 (D9C11_22805) azoJ 4218155..4218781 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  D9C11_RS22810 (D9C11_22810) stpP 4218934..4219425 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  D9C11_RS22815 (D9C11_22815) - 4219500..4219832 (-) 333 WP_014480020.1 hypothetical protein -
  D9C11_RS22820 (D9C11_22820) - 4219910..4220137 (+) 228 WP_041333659.1 hypothetical protein -
  D9C11_RS22825 (D9C11_22825) yocM 4220124..4220600 (-) 477 WP_041333656.1 salt stress-responsive protein YocM -
  D9C11_RS22830 (D9C11_22830) - 4220667..4220930 (+) 264 WP_004399338.1 hypothetical protein -
  D9C11_RS22835 (D9C11_22835) - 4220935..4221168 (+) 234 WP_003231251.1 hypothetical protein -
  D9C11_RS22840 (D9C11_22840) yozO 4221253..4221597 (-) 345 WP_003220141.1 PH domain-containing protein -
  D9C11_RS22845 (D9C11_22845) yozC 4221953..4222156 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67386.80 Da        Isoelectric Point: 6.1774

>NTDB_id=279262 D9C11_RS22790 WP_121591915.1 4215816..4217591(-) (recQ) [Bacillus subtilis subsp. subtilis strain PJ-7]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRDNLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQIVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLASSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=279262 D9C11_RS22790 WP_121591915.1 4215816..4217591(-) (recQ) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCAATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAATTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGATAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTAAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATTGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCCTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCAGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGAAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTATTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

98.985

100

0.99

Multiple sequence alignment