Detailed information NTG0279262

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K15_RS26460
• Genome accession: NZ_CP027718
• Coordinates: 5914296..5915168 (+)
• Length: 290 a.a.
• NCBI ID: WP_124339096.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain Q16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5909296..5920168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K15_RS26445 (C4K15_5375)	-	5911648..5912004 (-)	357	WP_038575698.1	BON domain-containing protein	-
C4K15_RS26450 (C4K15_5376)	-	5912292..5912708 (-)	417	WP_009050907.1	pilin	-
C4K15_RS26455 (C4K15_5377)	pilC	5913076..5914293 (+)	1218	WP_038575694.1	type II secretion system F family protein	Machinery gene
C4K15_RS26460 (C4K15_5378)	pilD	5914296..5915168 (+)	873	WP_124339096.1	A24 family peptidase	Machinery gene
C4K15_RS26465 (C4K15_5379)	coaE	5915165..5915788 (+)	624	WP_124339097.1	dephospho-CoA kinase	-
C4K15_RS26470 (C4K15_5380)	yacG	5915785..5915988 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K15_RS26475 (C4K15_5381)	-	5915993..5916208 (-)	216	WP_009050911.1	hypothetical protein	-
C4K15_RS26480 (C4K15_5382)	-	5916276..5916965 (-)	690	WP_038575688.1	energy-coupling factor ABC transporter permease	-
C4K15_RS26485 (C4K15_5383)	-	5916962..5917429 (-)	468	WP_124337245.1	FAD/FMN-containing dehydrogenase	-
C4K15_RS26490 (C4K15_5384)	-	5917884..5919320 (+)	1437	WP_124309587.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32108.30 Da
• Isoelectric Point: 7.9954

>NTDB_id=279262 C4K15_RS26460 WP_124339096.1 5914296..5915168(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDVDHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITSSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279262 C4K15_RS26460 WP_124339096.1 5914296..5915168(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGATTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCTTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGATGTCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCAGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	97.931	0.517
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	50.909	94.828	0.483
pilD	Acinetobacter nosocomialis M2	50.182	94.828	0.476
pilD	Neisseria gonorrhoeae MS11	47.426	93.793	0.445