Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K15_RS08855 Genome accession   NZ_CP027718
Coordinates   1962428..1963063 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain Q16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957428..1968063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K15_RS08835 (C4K15_1787) - 1957673..1958605 (+) 933 WP_081362295.1 ABC transporter ATP-binding protein -
  C4K15_RS08840 (C4K15_1788) - 1958602..1959381 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K15_RS08845 (C4K15_1789) - 1959430..1959945 (-) 516 WP_096373426.1 DUF2062 domain-containing protein -
  C4K15_RS08850 (C4K15_1790) comA 1960094..1962325 (+) 2232 WP_124337878.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K15_RS08855 (C4K15_1791) exbB 1962428..1963063 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K15_RS08860 (C4K15_1792) - 1963060..1963488 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K15_RS08865 (C4K15_1793) lpxK 1963488..1964498 (+) 1011 WP_124337879.1 tetraacyldisaccharide 4'-kinase -
  C4K15_RS08870 (C4K15_1794) - 1964522..1964707 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K15_RS08875 (C4K15_1795) kdsB 1964704..1965468 (+) 765 WP_124337880.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K15_RS08880 (C4K15_1796) - 1965468..1965932 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  C4K15_RS08885 (C4K15_1797) murB 1965929..1966948 (+) 1020 WP_124337881.1 UDP-N-acetylmuramate dehydrogenase -
  C4K15_RS08890 (C4K15_1798) - 1967197..1967667 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=279253 C4K15_RS08855 WP_007931657.1 1962428..1963063(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279253 C4K15_RS08855 WP_007931657.1 1962428..1963063(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment