Detailed information NTG0279252

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K15_RS08850
• Genome accession: NZ_CP027718
• Coordinates: 1960094..1962325 (+)
• Length: 743 a.a.
• NCBI ID: WP_124337878.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain Q16
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1955094..1967325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K15_RS08825 (C4K15_1785)	-	1956215..1956874 (+)	660	WP_124337877.1	transglutaminase family protein	-
C4K15_RS08830 (C4K15_1786)	-	1956917..1957540 (+)	624	WP_124307981.1	glutathione S-transferase	-
C4K15_RS08835 (C4K15_1787)	-	1957673..1958605 (+)	933	WP_081362295.1	ABC transporter ATP-binding protein	-
C4K15_RS08840 (C4K15_1788)	-	1958602..1959381 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K15_RS08845 (C4K15_1789)	-	1959430..1959945 (-)	516	WP_096373426.1	DUF2062 domain-containing protein	-
C4K15_RS08850 (C4K15_1790)	comA	1960094..1962325 (+)	2232	WP_124337878.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K15_RS08855 (C4K15_1791)	exbB	1962428..1963063 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K15_RS08860 (C4K15_1792)	-	1963060..1963488 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K15_RS08865 (C4K15_1793)	lpxK	1963488..1964498 (+)	1011	WP_124337879.1	tetraacyldisaccharide 4'-kinase	-
C4K15_RS08870 (C4K15_1794)	-	1964522..1964707 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K15_RS08875 (C4K15_1795)	kdsB	1964704..1965468 (+)	765	WP_124337880.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K15_RS08880 (C4K15_1796)	-	1965468..1965932 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K15_RS08885 (C4K15_1797)	murB	1965929..1966948 (+)	1020	WP_124337881.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81176.36 Da
• Isoelectric Point: 10.0461

>NTDB_id=279252 C4K15_RS08850 WP_124337878.1 1960094..1962325(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFALWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279252 C4K15_RS08850 WP_124337878.1 1960094..1962325(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain Q16]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGACAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATTTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTCGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGTGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCCTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGTTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCATTGCGCAAGCTGGGCATTGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCTGATCATGCCGGTGGTGCC
GATGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCAATGGGACGGGGTACGTTTTGCCCTGTGGCAATGGGCGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGCCCTGGCGGAG
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCATGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.839	96.77	0.618