Detailed information NTG0279236

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K16_RS26480
• Genome accession: NZ_CP027717
• Coordinates: 5887426..5888754 (+)
• Length: 442 a.a.
• NCBI ID: WP_081359715.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5882426..5893754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K16_RS26460 (C4K16_5375)	pgeF	5883927..5884652 (-)	726	WP_081359717.1	peptidoglycan editing factor PgeF	-
C4K16_RS26465 (C4K16_5376)	rluD	5884649..5885611 (-)	963	WP_081359716.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K16_RS26470 (C4K16_5377)	-	5885764..5886786 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K16_RS26475 (C4K16_5378)	-	5886921..5887154 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K16_RS26480 (C4K16_5379)	pilR	5887426..5888754 (+)	1329	WP_081359715.1	sigma-54 dependent transcriptional regulator	Regulator
C4K16_RS26485 (C4K16_5380)	thiO	5888751..5889851 (-)	1101	WP_081359714.1	glycine oxidase ThiO	-
C4K16_RS26490 (C4K16_5381)	-	5889906..5890307 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K16_RS26495 (C4K16_5382)	-	5890321..5893392 (-)	3072	WP_081359713.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48752.17 Da
• Isoelectric Point: 7.9404

>NTDB_id=279236 C4K16_RS26480 WP_081359715.1 5887426..5888754(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPANPATGPLLGDSTAMHKLRMQIDKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVCAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENQQIEARDLCLTPNSAHPAIAPGPTQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279236 C4K16_RS26480 WP_081359715.1 5887426..5888754(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCATGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGGCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTACCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCACTGCAGGCGGAAGTGTGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TCAACGTGATCGAGCTGGCGGTGCCACCACTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCAGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGACACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457