Detailed information NTG0279235

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K16_RS26310
• Genome accession: NZ_CP027717
• Coordinates: 5854174..5855046 (+)
• Length: 290 a.a.
• NCBI ID: WP_081359730.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5849174..5860046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K16_RS26295 (C4K16_5343)	-	5851525..5851881 (-)	357	WP_038575698.1	BON domain-containing protein	-
C4K16_RS26300 (C4K16_5344)	-	5852169..5852585 (-)	417	WP_009050907.1	pilin	-
C4K16_RS26305 (C4K16_5345)	pilC	5852954..5854171 (+)	1218	WP_038575694.1	type II secretion system F family protein	Machinery gene
C4K16_RS26310 (C4K16_5346)	pilD	5854174..5855046 (+)	873	WP_081359730.1	A24 family peptidase	Machinery gene
C4K16_RS26315 (C4K16_5347)	coaE	5855043..5855666 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
C4K16_RS26320 (C4K16_5348)	yacG	5855663..5855866 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K16_RS26325 (C4K16_5349)	-	5855871..5856086 (-)	216	WP_009050911.1	hypothetical protein	-
C4K16_RS26330 (C4K16_5350)	-	5856152..5856841 (-)	690	WP_038575688.1	energy-coupling factor ABC transporter permease	-
C4K16_RS26335 (C4K16_5351)	-	5856838..5857305 (-)	468	WP_124337245.1	FAD/FMN-containing dehydrogenase	-
C4K16_RS26340 (C4K16_5352)	-	5857760..5859196 (+)	1437	WP_124337246.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32080.24 Da
• Isoelectric Point: 7.9954

>NTDB_id=279235 C4K16_RS26310 WP_081359730.1 5854174..5855046(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITSSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279235 C4K16_RS26310 WP_081359730.1 5854174..5855046(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGCGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTACCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCAGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	97.931	0.517
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	50.909	94.828	0.483
pilD	Acinetobacter nosocomialis M2	50.182	94.828	0.476
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448