Detailed information NTG0279183

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K24_RS26110
• Genome accession: NZ_CP027715
• Coordinates: 5781102..5782430 (+)
• Length: 442 a.a.
• NCBI ID: WP_124309597.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain M12
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5776102..5787430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K24_RS26090 (C4K24_5307)	pgeF	5777590..5778315 (-)	726	WP_124309596.1	peptidoglycan editing factor PgeF	-
C4K24_RS26095 (C4K24_5308)	rluD	5778312..5779274 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K24_RS26100 (C4K24_5309)	-	5779427..5780449 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K24_RS26105 (C4K24_5310)	-	5780584..5780817 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K24_RS26110 (C4K24_5311)	pilR	5781102..5782430 (+)	1329	WP_124309597.1	sigma-54 dependent transcriptional regulator	Regulator
C4K24_RS26115 (C4K24_5312)	thiO	5782427..5783527 (-)	1101	WP_124309598.1	glycine oxidase ThiO	-
C4K24_RS26120 (C4K24_5313)	-	5783582..5783983 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K24_RS26125 (C4K24_5314)	-	5783997..5787068 (-)	3072	WP_124309599.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48745.11 Da
• Isoelectric Point: 8.5984

>NTDB_id=279183 C4K24_RS26110 WP_124309597.1 5781102..5782430(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALARLRELLNGTLPGSTPANPATGPLLGDSTAMHKLRGQIHKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279183 C4K24_RS26110 WP_124309597.1 5781102..5782430(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAATGGCACCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TGGGCGATTCGACCGCCATGCACAAACTGCGCGGGCAGATCCACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGTCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAGCTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.222	100	0.674
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457