Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K24_RS08780 Genome accession   NZ_CP027715
Coordinates   1935964..1936599 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain M12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1930964..1941599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K24_RS08760 (C4K24_1779) - 1931209..1932141 (+) 933 WP_053268526.1 ABC transporter ATP-binding protein -
  C4K24_RS08765 (C4K24_1780) - 1932138..1932917 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K24_RS08770 (C4K24_1781) - 1932966..1933481 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  C4K24_RS08775 (C4K24_1782) comA 1933630..1935861 (+) 2232 WP_124307982.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K24_RS08780 (C4K24_1783) exbB 1935964..1936599 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K24_RS08785 (C4K24_1784) - 1936596..1937024 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K24_RS08790 (C4K24_1785) lpxK 1937024..1938034 (+) 1011 WP_124307983.1 tetraacyldisaccharide 4'-kinase -
  C4K24_RS08795 (C4K24_1786) - 1938058..1938243 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K24_RS08800 (C4K24_1787) kdsB 1938240..1939004 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K24_RS08805 (C4K24_1788) - 1939004..1939468 (+) 465 WP_124307984.1 low molecular weight protein-tyrosine-phosphatase -
  C4K24_RS08810 (C4K24_1789) murB 1939465..1940484 (+) 1020 WP_124307985.1 UDP-N-acetylmuramate dehydrogenase -
  C4K24_RS08815 (C4K24_1790) - 1940733..1941203 (+) 471 WP_038580901.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=279173 C4K24_RS08780 WP_007931657.1 1935964..1936599(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279173 C4K24_RS08780 WP_007931657.1 1935964..1936599(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATTCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment