Detailed information NTG0279172

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K24_RS08775
• Genome accession: NZ_CP027715
• Coordinates: 1933630..1935861 (+)
• Length: 743 a.a.
• NCBI ID: WP_124307982.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain M12
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1928630..1940861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K24_RS08750 (C4K24_1777)	-	1929751..1930410 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K24_RS08755 (C4K24_1778)	-	1930453..1931076 (+)	624	WP_124307981.1	glutathione S-transferase	-
C4K24_RS08760 (C4K24_1779)	-	1931209..1932141 (+)	933	WP_053268526.1	ABC transporter ATP-binding protein	-
C4K24_RS08765 (C4K24_1780)	-	1932138..1932917 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K24_RS08770 (C4K24_1781)	-	1932966..1933481 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
C4K24_RS08775 (C4K24_1782)	comA	1933630..1935861 (+)	2232	WP_124307982.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K24_RS08780 (C4K24_1783)	exbB	1935964..1936599 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K24_RS08785 (C4K24_1784)	-	1936596..1937024 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K24_RS08790 (C4K24_1785)	lpxK	1937024..1938034 (+)	1011	WP_124307983.1	tetraacyldisaccharide 4'-kinase	-
C4K24_RS08795 (C4K24_1786)	-	1938058..1938243 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K24_RS08800 (C4K24_1787)	kdsB	1938240..1939004 (+)	765	WP_016702178.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K24_RS08805 (C4K24_1788)	-	1939004..1939468 (+)	465	WP_124307984.1	low molecular weight protein-tyrosine-phosphatase	-
C4K24_RS08810 (C4K24_1789)	murB	1939465..1940484 (+)	1020	WP_124307985.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81234.31 Da
• Isoelectric Point: 9.9471

>NTDB_id=279172 C4K24_RS08775 WP_124307982.1 1933630..1935861(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
MRTGMLALAAGLLSLRFLPALPALGWLAVLPVVALMLLPFRTYALALFLLGLTWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGEHWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLSWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHSNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279172 C4K24_RS08775 WP_124307982.1 1933630..1935861(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGCTCGGATGGCT
GGCCGTGTTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGACGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAGCACTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCTTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGCGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGTCTTGGGCCTGTGGGCTGGCGTTCGCCTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGTGTGATGGTCGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTTCTGCTGGCGTTGAATGCGGTGTTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGCTGCTGGCGGTGCCTTATCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGATGTGCTGTT
TCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGTATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGATTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCCTTGCGCAAGCTGGGCATTGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCTGATCATGCCGGTGGCGCG
GATGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCATAGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622