Detailed information NTG0279157

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K25_RS25665
• Genome accession: NZ_CP027714
• Coordinates: 5698488..5699816 (+)
• Length: 442 a.a.
• NCBI ID: WP_114761485.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17415
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5693488..5704816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K25_RS25645 (C4K25_5208)	pgeF	5694979..5695704 (-)	726	WP_114761484.1	peptidoglycan editing factor PgeF	-
C4K25_RS25650 (C4K25_5209)	rluD	5695701..5696663 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K25_RS25655 (C4K25_5210)	-	5696815..5697837 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K25_RS25660 (C4K25_5211)	-	5697971..5698204 (+)	234	WP_062824555.1	PP0621 family protein	-
C4K25_RS25665 (C4K25_5212)	pilR	5698488..5699816 (+)	1329	WP_114761485.1	sigma-54 dependent transcriptional regulator	Regulator
C4K25_RS25670 (C4K25_5213)	thiO	5699813..5700913 (-)	1101	WP_114761486.1	glycine oxidase ThiO	-
C4K25_RS25675 (C4K25_5214)	-	5700968..5701369 (-)	402	WP_007924724.1	type IV pilin protein	-
C4K25_RS25680 (C4K25_5215)	-	5701383..5704454 (-)	3072	WP_114761487.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48861.43 Da
• Isoelectric Point: 9.0627

>NTDB_id=279157 C4K25_RS25665 WP_114761485.1 5698488..5699816(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17415]
MSPRQKVLIVDDDPGIREYLEISLDRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSIPPNPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHEQGPRACHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279157 C4K25_RS25665 WP_114761485.1 5698488..5699816(+) (pilR) [Pseudomonas chlororaphis strain ATCC 17415]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGACGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGACCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCGCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCACGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGATACCACCGAACCCTGCTACCGGTCCATTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGTGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGAGCAGGGTCCTCGAGCCTGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAACACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCTATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.72	100	0.679
pilR	Acinetobacter baumannii strain A118	43.601	100	0.455