Detailed information NTG0279156

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K25_RS25495
• Genome accession: NZ_CP027714
• Coordinates: 5664813..5665685 (+)
• Length: 290 a.a.
• NCBI ID: WP_114761471.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ATCC 17415
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5659813..5670685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K25_RS25480 (C4K25_5175)	-	5662170..5662526 (-)	357	WP_009045666.1	BON domain-containing protein	-
C4K25_RS25485 (C4K25_5176)	-	5662812..5663228 (-)	417	WP_007924673.1	pilin	-
C4K25_RS25490 (C4K25_5177)	pilC	5663593..5664810 (+)	1218	WP_114761470.1	type II secretion system F family protein	Machinery gene
C4K25_RS25495 (C4K25_5178)	pilD	5664813..5665685 (+)	873	WP_114761471.1	A24 family peptidase	Machinery gene
C4K25_RS25500 (C4K25_5179)	coaE	5665682..5666305 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
C4K25_RS25505 (C4K25_5180)	yacG	5666302..5666505 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K25_RS25510 (C4K25_5181)	-	5666510..5666725 (-)	216	WP_007924682.1	hypothetical protein	-
C4K25_RS25515 (C4K25_5182)	-	5666791..5667480 (-)	690	WP_114761472.1	energy-coupling factor ABC transporter permease	-
C4K25_RS25520 (C4K25_5183)	-	5667477..5667944 (-)	468	WP_053262707.1	hypothetical protein	-
C4K25_RS25525 (C4K25_5184)	-	5668398..5669834 (+)	1437	WP_114761473.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32106.20 Da
• Isoelectric Point: 7.4003

>NTDB_id=279156 C4K25_RS25495 WP_114761471.1 5664813..5665685(+) (pilD) [Pseudomonas chlororaphis strain ATCC 17415]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPVGPTYNLLLPHSQCPHCAHPIR
PWENIPLFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279156 C4K25_RS25495 WP_114761471.1 5664813..5665685(+) (pilD) [Pseudomonas chlororaphis strain ATCC 17415]
ATGTCATTGACTGAGGTCCTGGCCAGCTATCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGTCGGGCCGACCTATAACCTGTTGCTCCCACACTCCCAGTGCCCGCACTGTGCGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTCGGCTGGCAGGCCGGCC
TGATGCTGCTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGACGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCCGGAGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.147	98.621	0.524
pilD	Vibrio campbellii strain DS40M4	51.579	98.276	0.507
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	50.185	93.448	0.469
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452