Detailed information NTG0279131

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K26_RS26010
• Genome accession: NZ_CP027713
• Coordinates: 5728385..5729713 (+)
• Length: 442 a.a.
• NCBI ID: WP_124352651.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain TAMOak81
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5723385..5734713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K26_RS25990 (C4K26_5242)	pgeF	5724876..5725601 (-)	726	WP_124352650.1	peptidoglycan editing factor PgeF	-
C4K26_RS25995 (C4K26_5243)	rluD	5725598..5726560 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K26_RS26000 (C4K26_5244)	-	5726712..5727734 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K26_RS26005 (C4K26_5245)	-	5727868..5728101 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K26_RS26010 (C4K26_5246)	pilR	5728385..5729713 (+)	1329	WP_124352651.1	sigma-54 dependent transcriptional regulator	Regulator
C4K26_RS26015 (C4K26_5247)	thiO	5729710..5730810 (-)	1101	WP_124352652.1	glycine oxidase ThiO	-
C4K26_RS26020 (C4K26_5248)	-	5730865..5731266 (-)	402	WP_124352653.1	type IV pilin protein	-
C4K26_RS26025 (C4K26_5249)	-	5731280..5734351 (-)	3072	WP_124352654.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48809.35 Da
• Isoelectric Point: 9.0627

>NTDB_id=279131 C4K26_RS26010 WP_124352651.1 5728385..5729713(+) (pilR) [Pseudomonas chlororaphis strain TAMOak81]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSTPPNPATGPLLGDSAAMHKLRGQIDKLARSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCIGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELPVPALRARKADIEPLATAILE
RLAQGNGQRLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEGCDLRLTPNSAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279131 C4K26_RS26010 WP_124352651.1 5728385..5729713(+) (pilR) [Pseudomonas chlororaphis strain TAMOak81]
ATGAGCCCACGACAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGTGCCGCCAACTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATTCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGACACCACCGAACCCTGCTACCGGCCCATTGC
TCGGTGATTCGGCCGCCATGCACAAACTGCGCGGACAAATCGACAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCTGGAAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGACCACGGGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGGGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTGCGTTGCATCGGTGGGCAACAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGCCGTTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAGCGGTTGGCGCGGCTTCAGCCAAGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCACACACCCTGTGCGAGAACCGGCGGATCGAAGGGTGCGACC
TGCGCCTGACGCCCAACAGCGCCCACCCGGCCATCACCCCCGGCCCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAACGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.667	100	0.679
pilR	Acinetobacter baumannii strain A118	43.818	100	0.457