Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K26_RS08970 Genome accession   NZ_CP027713
Coordinates   1959821..1960456 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain TAMOak81     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954821..1965456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K26_RS08950 (C4K26_1797) - 1955067..1955999 (+) 933 WP_124350099.1 ABC transporter ATP-binding protein -
  C4K26_RS08955 (C4K26_1798) - 1955996..1956775 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K26_RS08960 (C4K26_1799) - 1956824..1957339 (-) 516 WP_124350100.1 DUF2062 domain-containing protein -
  C4K26_RS08965 (C4K26_1800) comA 1957487..1959718 (+) 2232 WP_124350101.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K26_RS08970 (C4K26_1801) exbB 1959821..1960456 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K26_RS08975 (C4K26_1802) - 1960453..1960881 (+) 429 WP_087088775.1 biopolymer transporter ExbD -
  C4K26_RS08980 (C4K26_1803) lpxK 1960881..1961891 (+) 1011 WP_124350102.1 tetraacyldisaccharide 4'-kinase -
  C4K26_RS08985 (C4K26_1804) - 1961914..1962099 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K26_RS08990 (C4K26_1805) kdsB 1962096..1962860 (+) 765 WP_124350103.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K26_RS08995 (C4K26_1806) - 1962860..1963324 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  C4K26_RS09000 (C4K26_1807) murB 1963321..1964340 (+) 1020 WP_124350104.1 UDP-N-acetylmuramate dehydrogenase -
  C4K26_RS09005 (C4K26_1808) - 1964589..1965059 (+) 471 WP_124350105.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=279122 C4K26_RS08970 WP_007931657.1 1959821..1960456(+) (exbB) [Pseudomonas chlororaphis strain TAMOak81]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279122 C4K26_RS08970 WP_007931657.1 1959821..1960456(+) (exbB) [Pseudomonas chlororaphis strain TAMOak81]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCGCATCTGCTGGGCCAGGTATGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAGCTGCGCGCGCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTTGGCAT
GGAGCAGGAGGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment