Detailed information NTG0279121

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K26_RS08965
• Genome accession: NZ_CP027713
• Coordinates: 1957487..1959718 (+)
• Length: 743 a.a.
• NCBI ID: WP_124350101.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain TAMOak81
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1952487..1964718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K26_RS08940 (C4K26_1795)	-	1953609..1954268 (+)	660	WP_124350098.1	transglutaminase family protein	-
C4K26_RS08945 (C4K26_1796)	-	1954311..1954934 (+)	624	WP_009042835.1	glutathione S-transferase	-
C4K26_RS08950 (C4K26_1797)	-	1955067..1955999 (+)	933	WP_124350099.1	ABC transporter ATP-binding protein	-
C4K26_RS08955 (C4K26_1798)	-	1955996..1956775 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K26_RS08960 (C4K26_1799)	-	1956824..1957339 (-)	516	WP_124350100.1	DUF2062 domain-containing protein	-
C4K26_RS08965 (C4K26_1800)	comA	1957487..1959718 (+)	2232	WP_124350101.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K26_RS08970 (C4K26_1801)	exbB	1959821..1960456 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K26_RS08975 (C4K26_1802)	-	1960453..1960881 (+)	429	WP_087088775.1	biopolymer transporter ExbD	-
C4K26_RS08980 (C4K26_1803)	lpxK	1960881..1961891 (+)	1011	WP_124350102.1	tetraacyldisaccharide 4'-kinase	-
C4K26_RS08985 (C4K26_1804)	-	1961914..1962099 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K26_RS08990 (C4K26_1805)	kdsB	1962096..1962860 (+)	765	WP_124350103.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K26_RS08995 (C4K26_1806)	-	1962860..1963324 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K26_RS09000 (C4K26_1807)	murB	1963321..1964340 (+)	1020	WP_124350104.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81181.38 Da
• Isoelectric Point: 9.9628

>NTDB_id=279121 C4K26_RS08965 WP_124350101.1 1957487..1959718(+) (comA) [Pseudomonas chlororaphis strain TAMOak81]
MRTGMLALAAGLLCLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQVEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKVLAPSAVLISRGHGNGFGHPHPQVVERYRRQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279121 C4K26_RS08965 WP_124350101.1 1957487..1959718(+) (comA) [Pseudomonas chlororaphis strain TAMOak81]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGTGCCTGCGCTTTTTGCCGGCGCTACCAGCGATCGGATGGCT
GGCAGTGCTACCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTACCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGATGATCGTTTGGCGGAACCGCTCGACGGGCAGACTCGCTGGCTTGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGTCGAGGGTCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCATGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCTGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGGTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTACCGGTGCGCCGTGCCTGCGTGATGGTCGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGTTGCTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGTTTCTGGCTGTCCTTTACCGCGGTGGCGGTGTTGATCCTGATCTTTGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTACTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
TCGCGGTCTGGCGCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCCTGGGCTGGCCGATGCTGCTGTTGGTGGTA
TTCCCGCCGAAAAACACGTTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTACGACGCCGGTCCGCGTTTGGGGGACTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGAGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGTGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGTGTGATGCAGGTCGAAGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAA
CGCGCCTTGCTGGATACTCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCACGGCAGTCGCAGCTCGTCATC
CGCGGCCCTGCTCAAGGTCCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCGGCAAGGGACCGCCATTTACGACAGTGCGGAACAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.812	96.77	0.627