Detailed information NTG0279104

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K27_RS26485
• Genome accession: NZ_CP027712
• Coordinates: 5839740..5840612 (+)
• Length: 290 a.a.
• NCBI ID: WP_053262704.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5834740..5845612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K27_RS26470 (C4K27_5360)	-	5837097..5837453 (-)	357	WP_009045666.1	BON domain-containing protein	-
C4K27_RS26475 (C4K27_5361)	-	5837740..5838156 (-)	417	WP_007924673.1	pilin	-
C4K27_RS26480 (C4K27_5362)	pilC	5838520..5839737 (+)	1218	WP_053262703.1	type II secretion system F family protein	Machinery gene
C4K27_RS26485 (C4K27_5363)	pilD	5839740..5840612 (+)	873	WP_053262704.1	A24 family peptidase	Machinery gene
C4K27_RS26490 (C4K27_5364)	coaE	5840609..5841232 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
C4K27_RS26495 (C4K27_5365)	yacG	5841229..5841432 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K27_RS26500 (C4K27_5366)	-	5841438..5841653 (-)	216	WP_053262705.1	hypothetical protein	-
C4K27_RS26505 (C4K27_5367)	-	5841719..5842408 (-)	690	WP_053262706.1	energy-coupling factor ABC transporter permease	-
C4K27_RS26510 (C4K27_5368)	-	5842405..5842872 (-)	468	WP_053262707.1	hypothetical protein	-
C4K27_RS26515 (C4K27_5369)	-	5843328..5844764 (+)	1437	WP_053262708.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32103.19 Da
• Isoelectric Point: 7.6850

>NTDB_id=279104 C4K27_RS26485 WP_053262704.1 5839740..5840612(+) (pilD) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
MSLTEVLASYPLVFVASVLILGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPAGPTYNLLLPHSQCPNCAHPIR
PWENIPLFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279104 C4K27_RS26485 WP_053262704.1 5839740..5840612(+) (pilD) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGATCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAACGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCGAACTGTGCGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCTTGATCGTCAATGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGTTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACCGGA
GCCCTGGCCGGGATCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.497	98.621	0.528
pilD	Vibrio campbellii strain DS40M4	51.408	97.931	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	50.185	93.448	0.469
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448