Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K27_RS09080 Genome accession   NZ_CP027712
Coordinates   1994181..1994816 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1989181..1999816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K27_RS09060 (C4K27_1838) - 1989426..1990358 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  C4K27_RS09065 (C4K27_1839) - 1990355..1991134 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K27_RS09070 (C4K27_1840) - 1991183..1991698 (-) 516 WP_053260192.1 DUF2062 domain-containing protein -
  C4K27_RS09075 (C4K27_1841) comA 1991847..1994078 (+) 2232 WP_053260193.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K27_RS09080 (C4K27_1842) exbB 1994181..1994816 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K27_RS09085 (C4K27_1843) - 1994813..1995241 (+) 429 WP_007931660.1 ExbD/TolR family protein -
  C4K27_RS09090 (C4K27_1844) lpxK 1995241..1996251 (+) 1011 WP_053260194.1 tetraacyldisaccharide 4'-kinase -
  C4K27_RS09095 (C4K27_1845) - 1996274..1996459 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K27_RS09100 (C4K27_1846) kdsB 1996456..1997220 (+) 765 WP_053260195.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K27_RS09105 (C4K27_1847) - 1997220..1997684 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  C4K27_RS09110 (C4K27_1848) murB 1997681..1998700 (+) 1020 WP_053260196.1 UDP-N-acetylmuramate dehydrogenase -
  C4K27_RS09115 (C4K27_1849) - 1998949..1999419 (+) 471 WP_053260197.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=279096 C4K27_RS09080 WP_007931657.1 1994181..1994816(+) (exbB) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279096 C4K27_RS09080 WP_007931657.1 1994181..1994816(+) (exbB) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAGCTGCGCGCCCATTCGCCTCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment