Detailed information NTG0279095

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K27_RS09075
• Genome accession: NZ_CP027712
• Coordinates: 1991847..1994078 (+)
• Length: 743 a.a.
• NCBI ID: WP_053260193.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1986847..1999078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K27_RS09050 (C4K27_1836)	-	1987968..1988627 (+)	660	WP_007931646.1	transglutaminase-like domain-containing protein	-
C4K27_RS09055 (C4K27_1837)	-	1988670..1989293 (+)	624	WP_053260191.1	glutathione S-transferase family protein	-
C4K27_RS09060 (C4K27_1838)	-	1989426..1990358 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
C4K27_RS09065 (C4K27_1839)	-	1990355..1991134 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K27_RS09070 (C4K27_1840)	-	1991183..1991698 (-)	516	WP_053260192.1	DUF2062 domain-containing protein	-
C4K27_RS09075 (C4K27_1841)	comA	1991847..1994078 (+)	2232	WP_053260193.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K27_RS09080 (C4K27_1842)	exbB	1994181..1994816 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K27_RS09085 (C4K27_1843)	-	1994813..1995241 (+)	429	WP_007931660.1	ExbD/TolR family protein	-
C4K27_RS09090 (C4K27_1844)	lpxK	1995241..1996251 (+)	1011	WP_053260194.1	tetraacyldisaccharide 4'-kinase	-
C4K27_RS09095 (C4K27_1845)	-	1996274..1996459 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K27_RS09100 (C4K27_1846)	kdsB	1996456..1997220 (+)	765	WP_053260195.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K27_RS09105 (C4K27_1847)	-	1997220..1997684 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K27_RS09110 (C4K27_1848)	murB	1997681..1998700 (+)	1020	WP_053260196.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81142.21 Da
• Isoelectric Point: 9.7323

>NTDB_id=279095 C4K27_RS09075 WP_053260193.1 1991847..1994078(+) (comA) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
MRTGMLALAAGLLCLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQWALDDRLAEPLDGQTHWLEG
RVVGLPQQTEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLATTRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVAHLDLMLLSHADADHAGGA
DAISRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279095 C4K27_RS09075 WP_053260193.1 1991847..1994078(+) (comA) [Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTATGCCTGCGCTTTTTGCCGGCGCTACCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCCCTCTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGATGATCGTTTGGCGGAACCGCTCGACGGGCAGACTCACTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGACCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGCCGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAATTGCTGGCCACCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGTGGACTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGCGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGTGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGTTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCTGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCACCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATTTCGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAG
CGCGCCTTGCTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCATCACGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624