Detailed information NTG0279054

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K35_RS28540
• Genome accession: NZ_CP027710
• Coordinates: 6280440..6281768 (+)
• Length: 442 a.a.
• NCBI ID: WP_124303645.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain SLPH10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6275440..6286768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K35_RS28520 (C4K35_5765)	pgeF	6276938..6277663 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
C4K35_RS28525 (C4K35_5766)	rluD	6277660..6278622 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K35_RS28530 (C4K35_5767)	-	6278775..6279797 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K35_RS28535 (C4K35_5768)	-	6279932..6280165 (+)	234	WP_124303643.1	PP0621 family protein	-
C4K35_RS28540 (C4K35_5770)	pilR	6280440..6281768 (+)	1329	WP_124303645.1	sigma-54-dependent transcriptional regulator	Regulator
C4K35_RS28545 (C4K35_5771)	thiO	6281765..6282865 (-)	1101	WP_063433073.1	glycine oxidase ThiO	-
C4K35_RS28550 (C4K35_5772)	-	6282920..6283321 (-)	402	WP_009050937.1	type IV pilin protein	-
C4K35_RS28555 (C4K35_5773)	-	6283335..6286403 (-)	3069	WP_063433074.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48888.25 Da
• Isoelectric Point: 8.9622

>NTDB_id=279054 C4K35_RS28540 WP_124303645.1 6280440..6281768(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain SLPH10]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRANRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279054 C4K35_RS28540 WP_124303645.1 6280440..6281768(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain SLPH10]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGGCCACGGGCCAACCGCGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAACCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462