Detailed information NTG0279000

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K37_RS28175
• Genome accession: NZ_CP027708
• Coordinates: 6262661..6263989 (+)
• Length: 442 a.a.
• NCBI ID: WP_124325552.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ATCC 17411
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6257661..6268989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K37_RS28155 (C4K37_5717)	pgeF	6259159..6259884 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
C4K37_RS28160 (C4K37_5718)	rluD	6259881..6260843 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K37_RS28165 (C4K37_5719)	-	6260996..6262018 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K37_RS28170 (C4K37_5720)	-	6262153..6262386 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K37_RS28175 (C4K37_5722)	pilR	6262661..6263989 (+)	1329	WP_124325552.1	sigma-54 dependent transcriptional regulator	Regulator
C4K37_RS28180 (C4K37_5723)	thiO	6263986..6265086 (-)	1101	WP_124325553.1	glycine oxidase ThiO	-
C4K37_RS28185 (C4K37_5724)	-	6265141..6265542 (-)	402	WP_097305151.1	type IV pilin protein	-
C4K37_RS28190 (C4K37_5725)	-	6265556..6268627 (-)	3072	WP_124325554.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48824.16 Da
• Isoelectric Point: 8.7307

>NTDB_id=279000 C4K37_RS28175 WP_124325552.1 6262661..6263989(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ATCC 17411]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279000 C4K37_RS28175 WP_124325552.1 6262661..6263989(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ATCC 17411]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAAGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGGCAAACTGGCCCAGAGCCAGGCATCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTACGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457