Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K38_RS30025 Genome accession   NZ_CP027707
Coordinates   6595928..6596335 (-) Length   135 a.a.
NCBI ID   WP_009051308.1    Uniprot ID   A0AB33WTM4
Organism   Pseudomonas chlororaphis subsp. piscium strain DSM 21509     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6590928..6601335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K38_RS30010 (C4K38_6065) - 6592807..6594843 (-) 2037 WP_231998605.1 methyl-accepting chemotaxis protein -
  C4K38_RS30015 (C4K38_6066) - 6594968..6595507 (-) 540 WP_038575084.1 chemotaxis protein CheW -
  C4K38_RS30020 (C4K38_6067) pilH 6595519..6595884 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  C4K38_RS30025 (C4K38_6068) pilG 6595928..6596335 (-) 408 WP_009051308.1 twitching motility response regulator PilG Regulator
  C4K38_RS30030 (C4K38_6069) gshB 6596572..6597528 (+) 957 WP_053281269.1 glutathione synthase -
  C4K38_RS30035 (C4K38_6070) - 6597649..6598548 (+) 900 WP_053281270.1 energy transducer TonB -
  C4K38_RS30040 (C4K38_6071) - 6598625..6599194 (+) 570 WP_025807188.1 YqgE/AlgH family protein -
  C4K38_RS30045 (C4K38_6072) ruvX 6599194..6599631 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  C4K38_RS30050 (C4K38_6073) pyrR 6599752..6600258 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C4K38_RS30055 (C4K38_6074) - 6600285..6601289 (+) 1005 WP_007929978.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14755.09 Da        Isoelectric Point: 6.7123

>NTDB_id=278978 C4K38_RS30025 WP_009051308.1 6595928..6596335(-) (pilG) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFESLAKIADNHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=278978 C4K38_RS30025 WP_009051308.1 6595928..6596335(-) (pilG) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTCGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGTCCCTGGCCAAGATCGCCGACAATCACCCGGACA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment