Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K38_RS08995 Genome accession   NZ_CP027707
Coordinates   1971758..1972393 (+) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis subsp. piscium strain DSM 21509     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966758..1977393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K38_RS08975 (C4K38_1810) - 1967004..1967936 (+) 933 WP_053278047.1 ABC transporter ATP-binding protein -
  C4K38_RS08980 (C4K38_1811) - 1967933..1968712 (+) 780 WP_053278048.1 ABC transporter permease -
  C4K38_RS08985 (C4K38_1812) - 1968761..1969276 (-) 516 WP_053278049.1 DUF2062 domain-containing protein -
  C4K38_RS08990 (C4K38_1813) comA 1969424..1971655 (+) 2232 WP_053278050.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K38_RS08995 (C4K38_1814) exbB 1971758..1972393 (+) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K38_RS09000 (C4K38_1815) - 1972390..1972818 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K38_RS09005 (C4K38_1816) lpxK 1972818..1973828 (+) 1011 WP_053278051.1 tetraacyldisaccharide 4'-kinase -
  C4K38_RS09010 (C4K38_1817) - 1973852..1974037 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K38_RS09015 (C4K38_1818) kdsB 1974034..1974798 (+) 765 WP_053278052.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K38_RS09020 (C4K38_1819) - 1974798..1975262 (+) 465 WP_053278053.1 low molecular weight protein-tyrosine-phosphatase -
  C4K38_RS09025 (C4K38_1820) murB 1975259..1976278 (+) 1020 WP_053278054.1 UDP-N-acetylmuramate dehydrogenase -
  C4K38_RS09030 (C4K38_1821) - 1976532..1977002 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=278964 C4K38_RS08995 WP_025804353.1 1971758..1972393(+) (exbB) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=278964 C4K38_RS08995 WP_025804353.1 1971758..1972393(+) (exbB) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCTCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGTAT
GGAGCAGGAAGCCATCAAACTGGTCGAAGTGGTGCAAGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment