Detailed information NTG0278963

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K38_RS08990
• Genome accession: NZ_CP027707
• Coordinates: 1969424..1971655 (+)
• Length: 743 a.a.
• NCBI ID: WP_053278050.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain DSM 21509
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1964424..1976655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K38_RS08965 (C4K38_1808)	-	1965546..1966205 (+)	660	WP_053278045.1	transglutaminase family protein	-
C4K38_RS08970 (C4K38_1809)	-	1966248..1966871 (+)	624	WP_053278046.1	glutathione S-transferase	-
C4K38_RS08975 (C4K38_1810)	-	1967004..1967936 (+)	933	WP_053278047.1	ABC transporter ATP-binding protein	-
C4K38_RS08980 (C4K38_1811)	-	1967933..1968712 (+)	780	WP_053278048.1	ABC transporter permease	-
C4K38_RS08985 (C4K38_1812)	-	1968761..1969276 (-)	516	WP_053278049.1	DUF2062 domain-containing protein	-
C4K38_RS08990 (C4K38_1813)	comA	1969424..1971655 (+)	2232	WP_053278050.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K38_RS08995 (C4K38_1814)	exbB	1971758..1972393 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K38_RS09000 (C4K38_1815)	-	1972390..1972818 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K38_RS09005 (C4K38_1816)	lpxK	1972818..1973828 (+)	1011	WP_053278051.1	tetraacyldisaccharide 4'-kinase	-
C4K38_RS09010 (C4K38_1817)	-	1973852..1974037 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K38_RS09015 (C4K38_1818)	kdsB	1974034..1974798 (+)	765	WP_053278052.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K38_RS09020 (C4K38_1819)	-	1974798..1975262 (+)	465	WP_053278053.1	low molecular weight protein-tyrosine-phosphatase	-
C4K38_RS09025 (C4K38_1820)	murB	1975259..1976278 (+)	1020	WP_053278054.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81346.36 Da
• Isoelectric Point: 10.0609

>NTDB_id=278963 C4K38_RS08990 WP_053278050.1 1969424..1971655(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWSMLLLMV
FPPRNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVEHLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKTLAPSAVLISRGHGNGFGHPHPQVVERYRQQGTVIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=278963 C4K38_RS08990 WP_053278050.1 1969424..1971655(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCTGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCATGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCTGGTGGCCTGGCGGCGCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGTTACGGCCTGTGGCCGGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATCCAATGGTTGATCGCCATCGGCCTATGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGAACCCTGGATCAGCCTGCTGGTATTGCCACCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGGCTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTGCTGTT
TCGCGGTCTGGCACTGCTGGCTGCCCAATGGCCGGCGTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGATGGTCGATGCTGCTGTTGATGGTG
TTCCCGCCGAGAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGTCCGCGTTTTGGCGACTCCGATCTGGGCGCCCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGAGCACCTTGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCTATCCAGCGCGGCTTGCCAGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTACGTTTTTCCCTGTGGCAATGGGCGGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCTAAGGGCGAGCGATTGCTGCTGACCGGGGATATCGATGCCCAGGCGGAA
CGTGCGCTGTTGAATACCCCGCTGGCTGTCGAGACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CCCGGCCTTGCTCAAGACCCTTGCGCCTTCGGCGGTGCTGATTTCCCGGGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGTTATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGTACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626