Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C09_RS21435 Genome accession   NZ_CP032852
Coordinates   4010756..4011391 (-) Length   211 a.a.
NCBI ID   WP_014480830.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4005756..4016391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS21415 (D9C09_21415) yvzF 4006818..4007003 (-) 186 WP_014480826.1 YvzF family protein -
  D9C09_RS21420 (D9C09_21420) gerAA 4007122..4008570 (+) 1449 WP_014480827.1 spore germination receptor protein GerAA -
  D9C09_RS21425 (D9C09_21425) gerAB 4008539..4009636 (+) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  D9C09_RS21430 (D9C09_21430) gerAC 4009633..4010748 (+) 1116 WP_014480829.1 spore germination receptor protein GerAC -
  D9C09_RS21435 (D9C09_21435) vraR 4010756..4011391 (-) 636 WP_014480830.1 two-component system response regulator LiaR Regulator
  D9C09_RS21440 (D9C09_21440) liaS 4011369..4012451 (-) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  D9C09_RS21445 (D9C09_21445) liaF 4012448..4013173 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  D9C09_RS21450 (D9C09_21450) liaG 4013207..4014079 (-) 873 WP_014480833.1 DUF4097 domain-containing protein -
  D9C09_RS21455 (D9C09_21455) liaH 4014180..4014857 (-) 678 WP_069837769.1 stress responsive protein LiaH -
  D9C09_RS21460 (D9C09_21460) liaI 4014884..4015264 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23197.79 Da        Isoelectric Point: 4.9049

>NTDB_id=278963 D9C09_RS21435 WP_014480830.1 4010756..4011391(-) (vraR) [Bacillus subtilis subsp. subtilis strain GFR-12]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=278963 D9C09_RS21435 WP_014480830.1 4010756..4011391(-) (vraR) [Bacillus subtilis subsp. subtilis strain GFR-12]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398

Multiple sequence alignment