Detailed information NTG0278951

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K39_RS21590
• Genome accession: NZ_CP027706
• Coordinates: 4647162..4648034 (-)
• Length: 290 a.a.
• NCBI ID: WP_124347365.1
• Uniprot ID: -
• Organism: Pseudomonas sessilinigenes strain CMR12a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4642162..4653034

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K39_RS21550 (C4K39_4357)	-	4642389..4643687 (-)	1299	WP_068575534.1	NAD(P)/FAD-dependent oxidoreductase	-
C4K39_RS21555 (C4K39_4358)	-	4643748..4643921 (-)	174	WP_068575533.1	DUF3094 family protein	-
C4K39_RS21560 (C4K39_4359)	-	4644110..4644739 (-)	630	WP_068575532.1	DUF1780 domain-containing protein	-
C4K39_RS21565 (C4K39_4360)	-	4644892..4645359 (+)	468	WP_068575531.1	hypothetical protein	-
C4K39_RS21570 (C4K39_4361)	-	4645356..4646045 (+)	690	WP_124347363.1	energy-coupling factor ABC transporter permease	-
C4K39_RS21575 (C4K39_4362)	-	4646109..4646324 (+)	216	WP_022641062.1	hypothetical protein	-
C4K39_RS21580 (C4K39_4363)	yacG	4646342..4646545 (-)	204	WP_068575529.1	DNA gyrase inhibitor YacG	-
C4K39_RS21585 (C4K39_4364)	coaE	4646542..4647165 (-)	624	WP_124347364.1	dephospho-CoA kinase	-
C4K39_RS21590 (C4K39_4365)	pilD	4647162..4648034 (-)	873	WP_124347365.1	A24 family peptidase	Machinery gene
C4K39_RS21595 (C4K39_4366)	pilC	4648037..4649254 (-)	1218	WP_068575526.1	type II secretion system F family protein	Machinery gene
C4K39_RS21600 (C4K39_4367)	-	4649529..4649945 (+)	417	WP_124347366.1	pilin	-
C4K39_RS21605 (C4K39_4368)	-	4650162..4650518 (+)	357	WP_124347367.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32030.13 Da
• Isoelectric Point: 6.6813

>NTDB_id=278951 C4K39_RS21590 WP_124347365.1 4647162..4648034(-) (pilD) [Pseudomonas sessilinigenes strain CMR12a]
MSLPEVLSLYPLVFVMTGLLLGLIVGSFLNVLVWRLPQMLERDWRAQAHEILGLPAEPETAPYNLLLPHSHCPSCGTPIR
PWQNVPLISYLWLRGHCAHCQASISLRYPLTELACGLLSAFVAWHFGFGWPAGLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNSFGIFTDLENALWGAAIGYLFLWSVFWLFKLLTGKDGLGHGDFKLLALLGAWGGWQILPLTLLLASLTG
ALLGTLILRLRQAKGSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=278951 C4K39_RS21590 WP_124347365.1 4647162..4648034(-) (pilD) [Pseudomonas sessilinigenes strain CMR12a]
ATGTCCTTGCCTGAAGTCCTTAGCCTTTATCCCCTGGTATTCGTAATGACCGGCCTACTGCTGGGGCTGATCGTCGGCAG
TTTTCTCAATGTACTGGTCTGGCGTCTGCCACAGATGCTCGAGCGTGACTGGCGGGCCCAAGCCCATGAAATCCTGGGGC
TACCTGCAGAGCCTGAAACCGCTCCCTATAACCTGCTGTTGCCCCATTCCCATTGCCCCAGCTGCGGAACACCTATCCGT
CCCTGGCAGAATGTTCCGCTGATCAGCTATCTGTGGCTGCGTGGCCACTGCGCCCATTGCCAAGCCAGCATCAGCCTGCG
CTATCCCCTGACCGAACTGGCTTGCGGCCTGCTCTCGGCGTTCGTAGCCTGGCATTTCGGTTTTGGCTGGCCAGCCGGCT
TGATGCTGCTTCTGAGCTGGGGCTTGCTGGCCATGAGCCTGATCGACGCCGACCATCAGTTGCTACCGGATGTTCTGGTA
CTGCCGTTGCTGTGGCTGGGACTGATCGTCAACAGCTTCGGTATCTTCACAGACCTTGAGAATGCCCTGTGGGGCGCGGC
GATCGGCTACTTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGATGGCCTGGGCCATGGTGATT
TCAAGCTGCTGGCGCTGCTGGGTGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACCCTGCTTCTGGCCTCCCTGACCGGG
GCGCTGCTGGGCACCCTCATATTGCGCTTGCGCCAGGCCAAAGGCTCGACGCCTATCCCCTTTGGCCCATTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.064	97.241	0.497
pilD	Vibrio campbellii strain DS40M4	48.936	97.241	0.476
pilD	Acinetobacter baumannii D1279779	50.187	92.069	0.462
pilD	Acinetobacter nosocomialis M2	50.187	92.069	0.462
pilD	Neisseria gonorrhoeae MS11	49.012	87.241	0.428