Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K40_RS29455 Genome accession   NZ_CP027705
Coordinates   6377452..6377856 (-) Length   134 a.a.
NCBI ID   WP_022641612.1    Uniprot ID   -
Organism   Pseudomonas sp. CMR5c     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6372452..6382856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS29440 (C4K40_5968) - 6374283..6376346 (-) 2064 WP_053133969.1 methyl-accepting chemotaxis protein -
  C4K40_RS29445 (C4K40_5969) - 6376478..6377017 (-) 540 WP_022641610.1 chemotaxis protein CheW -
  C4K40_RS29450 (C4K40_5970) pilH 6377029..6377394 (-) 366 WP_053134101.1 twitching motility response regulator PilH -
  C4K40_RS29455 (C4K40_5971) pilG 6377452..6377856 (-) 405 WP_022641612.1 twitching motility response regulator PilG Regulator
  C4K40_RS29460 (C4K40_5972) gshB 6378150..6379121 (+) 972 WP_053133966.1 glutathione synthase -
  C4K40_RS29465 (C4K40_5973) - 6379251..6380150 (+) 900 WP_053133962.1 energy transducer TonB -
  C4K40_RS29470 (C4K40_5974) - 6380232..6380801 (+) 570 WP_022641614.1 YqgE/AlgH family protein -
  C4K40_RS29475 (C4K40_5975) ruvX 6380801..6381238 (+) 438 WP_022641615.1 Holliday junction resolvase RuvX -
  C4K40_RS29480 (C4K40_5976) pyrR 6381499..6382005 (+) 507 WP_053133958.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14734.23 Da        Isoelectric Point: 7.2445

>NTDB_id=278928 C4K40_RS29455 WP_022641612.1 6377452..6377856(-) (pilG) [Pseudomonas sp. CMR5c]
MEQQSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALAKIVDHHPGIIFVDIMMPRLDGYQTCALVKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIRAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=278928 C4K40_RS29455 WP_022641612.1 6377452..6377856(-) (pilG) [Pseudomonas sp. CMR5c]
ATGGAACAGCAATCCAACGCCTTGAAGGTGATGGTGATCGACGACTCGAAGACGATTCGCCGCACGGCCGAGATGCTGCT
GAAGAACGTCGGCTGCGAGGTCATCACCGCGGTGGATGGCTTCGAAGCCCTGGCCAAGATCGTCGACCACCACCCCGGGA
TCATCTTCGTCGACATCATGATGCCGCGCCTCGACGGTTATCAGACCTGTGCGCTGGTCAAGAACAACAGCGCGTTCAAG
TCCACTCCCGTGATCATGCTGTCCTCCAAGGACGGGCTGTTCGACAAGGCCAAGGGCCGCATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTCAGCGCGATCAGGGCCCATGTCCCGGACTTCGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701
  vicR Streptococcus mutans UA159

42.735

87.313

0.373

Multiple sequence alignment