Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6571_RS08095 Genome accession   NZ_CP027669
Coordinates   1740601..1741980 (+) Length   459 a.a.
NCBI ID   WP_106446231.1    Uniprot ID   -
Organism   Simplicispira suum strain SC1-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1735601..1746980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6571_RS08080 (C6571_08080) - 1736985..1739294 (+) 2310 WP_106448118.1 NADP-dependent malic enzyme -
  C6571_RS08085 (C6571_08085) - 1739458..1739862 (+) 405 WP_106446229.1 ribonuclease domain-containing protein -
  C6571_RS08090 (C6571_08090) - 1739911..1740336 (+) 426 WP_106446230.1 barstar family protein -
  C6571_RS08095 (C6571_08095) radA 1740601..1741980 (+) 1380 WP_106446231.1 DNA repair protein RadA Machinery gene
  C6571_RS08100 (C6571_08100) - 1742107..1743045 (+) 939 WP_106446232.1 branched-chain amino acid transaminase -
  C6571_RS08105 (C6571_08105) - 1743049..1743255 (+) 207 WP_106446233.1 zinc-finger domain-containing protein -
  C6571_RS08110 (C6571_08110) - 1743367..1744677 (+) 1311 WP_245901460.1 O-antigen ligase family protein -
  C6571_RS08115 (C6571_08115) - 1744674..1745810 (+) 1137 WP_106446235.1 glycosyltransferase family 4 protein -
  C6571_RS08120 (C6571_08120) - 1745807..1746847 (+) 1041 WP_106446236.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48370.65 Da        Isoelectric Point: 6.9499

>NTDB_id=278854 C6571_RS08095 WP_106446231.1 1740601..1741980(+) (radA) [Simplicispira suum strain SC1-8]
MSKEKTVFVCSDCGGSSPRWLGKCPQCGSWNTLNETVAESPGGRNRYASGSRPALNAAQAVAPLSSIEASDFERTATGLD
ELDRVLGGGMVEGAVVLIGGDPGIGKSTLLLQALDALQRTGLSTLYVTGEESGAQVALRSRRLGLDHSMVQVLAETQLEK
IIATIEQTQPAVAVIDSIQTMYSEALSSAPGSVAQVRECAAHLTRLAKATGVAIILVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDGG
GPSPRRLSVGLDRDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRARAMPKGFLAFGEVGL
AGEVRPAPRGQERLREAAKLGFSVAIVPKANVPKKPIEGLTIHAVERIEQAMDVVRELQ

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=278854 C6571_RS08095 WP_106446231.1 1740601..1741980(+) (radA) [Simplicispira suum strain SC1-8]
ATGTCCAAAGAAAAAACGGTTTTCGTCTGCTCGGACTGCGGTGGAAGCAGTCCTCGCTGGCTGGGAAAATGTCCGCAATG
CGGCAGCTGGAACACCCTGAATGAGACAGTGGCCGAGTCGCCAGGTGGGCGCAACCGCTACGCGAGCGGCTCGCGTCCAG
CGCTCAATGCGGCCCAGGCGGTAGCGCCGTTGTCGTCCATCGAGGCCAGCGACTTCGAGCGCACCGCCACTGGTCTGGAT
GAGTTGGACCGCGTTCTGGGCGGCGGCATGGTCGAAGGCGCCGTGGTGCTGATCGGCGGCGATCCGGGTATCGGCAAATC
GACGCTGTTGTTGCAGGCGCTGGATGCCTTGCAGCGAACCGGTCTGTCCACGCTGTACGTCACCGGCGAAGAAAGTGGCG
CCCAGGTGGCCTTGCGTTCGCGCAGATTGGGCTTGGACCACAGCATGGTCCAGGTGCTGGCCGAGACGCAGCTGGAGAAA
ATCATCGCCACCATCGAGCAGACCCAACCCGCGGTCGCGGTCATTGATTCGATCCAGACCATGTATTCCGAGGCGCTCAG
CTCCGCGCCCGGCTCGGTGGCGCAGGTACGCGAGTGCGCGGCGCACCTGACGCGCCTGGCCAAAGCGACCGGCGTGGCCA
TCATTCTGGTGGGTCACGTCACCAAGGAAGGGGCCCTGGCGGGTCCTCGCGTGCTGGAACACATGGTCGATACGGTGCTG
TACTTTGAAGGCGATACGCATTCGAGCTTCCGTCTGGTTCGTGCCATCAAGAATCGCTTTGGCGCTGTCAATGAAATCGG
TGTCTTCGCCATGACCGAGCGCGGCCTCAAAGGCGTGAGCAATCCCAGTGCGATTTTTCTGAGCCAACACAGTGAACCGG
TCCCAGGCAGCTGCGTGTTGGTCACGCTGGAAGGCACCCGCCCCATGCTGGTGGAAATCCAGGCGCTGGTCGACGGTGGC
GGACCCAGCCCACGGCGCCTTTCTGTCGGCCTGGACCGCGATCGCTTGGCGATGCTGCTGGCCGTACTACACCGCCATGC
AGGCGTGGCATGCGCAGACCAGGATGTCTTCGTCAATGCCGTGGGTGGGGTCCGCATCAGCGAACCGGCGGCGGATCTGG
CCGTGATGCTGGCCATTACCTCCAGCCTGCGCGCTCGCGCCATGCCCAAAGGCTTCCTGGCGTTTGGTGAGGTGGGTCTG
GCGGGCGAGGTGCGCCCTGCACCGCGCGGTCAGGAGCGCCTTCGCGAGGCAGCCAAGCTGGGCTTCTCGGTGGCCATCGT
ACCCAAGGCCAATGTGCCCAAGAAGCCCATCGAAGGGCTGACGATTCATGCGGTTGAACGCATCGAACAGGCCATGGATG
TGGTGCGCGAGCTGCAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

99.346

0.488
  radA Streptococcus pneumoniae Rx1

47.651

97.386

0.464
  radA Streptococcus pneumoniae D39

47.651

97.386

0.464
  radA Streptococcus pneumoniae TIGR4

47.651

97.386

0.464
  radA Streptococcus pneumoniae R6

47.651

97.386

0.464
  radA Streptococcus mitis NCTC 12261

46.389

99.564

0.462
  radA Streptococcus mitis SK321

47.309

97.168

0.46

Multiple sequence alignment