Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C6570_RS06855 Genome accession   NZ_CP027666
Coordinates   1455896..1456270 (+) Length   124 a.a.
NCBI ID   WP_106702555.1    Uniprot ID   A0A2S0MDN4
Organism   Ottowia oryzae strain KADR8-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450896..1461270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6570_RS06830 (C6570_06820) purH 1450965..1452569 (+) 1605 WP_106702551.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  C6570_RS18260 - 1452673..1453080 (-) 408 WP_211297657.1 hypothetical protein -
  C6570_RS06840 (C6570_06830) hemL 1453282..1454592 (-) 1311 WP_106702552.1 glutamate-1-semialdehyde 2,1-aminomutase -
  C6570_RS06845 (C6570_06835) - 1454576..1455454 (-) 879 WP_245896322.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C6570_RS06850 (C6570_06840) - 1455645..1455815 (+) 171 WP_106702554.1 rubredoxin -
  C6570_RS06855 (C6570_06845) pilG 1455896..1456270 (+) 375 WP_106702555.1 response regulator Regulator
  C6570_RS06860 (C6570_06850) - 1456282..1456647 (+) 366 WP_106702556.1 response regulator -
  C6570_RS06865 (C6570_06855) - 1456654..1457184 (+) 531 WP_106702557.1 chemotaxis protein CheW -
  C6570_RS06870 (C6570_06860) - 1457204..1459453 (+) 2250 WP_106702558.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13818.85 Da        Isoelectric Point: 5.8682

>NTDB_id=278810 C6570_RS06855 WP_106702555.1 1455896..1456270(+) (pilG) [Ottowia oryzae strain KADR8-3]
MAQKRVLVIDDSNTIRRSAEIFLKQGGHEVMLAEDGFDALAKVNDAQPDLIFCDILMPRLDGYQTCAIIKRNEKFSSTPI
VMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVEQFGSSS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=278810 C6570_RS06855 WP_106702555.1 1455896..1456270(+) (pilG) [Ottowia oryzae strain KADR8-3]
ATGGCTCAAAAGCGCGTGCTCGTCATCGATGACAGCAACACCATTCGCCGCAGTGCAGAGATTTTTCTGAAGCAGGGCGG
CCACGAGGTCATGCTCGCCGAAGACGGCTTCGATGCCCTGGCCAAGGTCAACGATGCGCAGCCGGATCTGATCTTCTGCG
ACATCCTGATGCCTCGTCTGGACGGTTACCAGACTTGTGCCATCATCAAACGAAACGAAAAGTTCTCATCCACGCCGATC
GTCATGCTGTCCTCGAAGGACGGGGTGTTCGACAAGGCGCGCGGGCGCATGGTGGGTTCGCAGGATTACCTGACCAAGCC
CTTCACGAAAGATCAGCTGCTGCAAGCGGTTGAACAATTTGGCTCGAGCAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0MDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.664

95.968

0.573
  vicR Streptococcus mutans UA159

39.474

91.935

0.363

Multiple sequence alignment