Detailed information NTG0278791

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C6Y50_RS20160
• Genome accession: NZ_CP027664
• Coordinates: 4257864..4260089 (-)
• Length: 741 a.a.
• NCBI ID: WP_106443470.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain 1W1-1A
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4252864..4265089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Y50_RS20125 (C6Y50_20130)	murB	4253254..4254273 (-)	1020	WP_106443466.1	UDP-N-acetylmuramate dehydrogenase	-
C6Y50_RS20130 (C6Y50_20135)	-	4254270..4254737 (-)	468	WP_106443467.1	low molecular weight protein-tyrosine-phosphatase	-
C6Y50_RS20135 (C6Y50_20140)	kdsB	4254739..4255503 (-)	765	WP_106443468.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C6Y50_RS20140 (C6Y50_20145)	-	4255500..4255685 (-)	186	WP_011913743.1	Trm112 family protein	-
C6Y50_RS20145 (C6Y50_20150)	lpxK	4255731..4256735 (-)	1005	WP_106443469.1	tetraacyldisaccharide 4'-kinase	-
C6Y50_RS20150 (C6Y50_20155)	-	4256735..4257163 (-)	429	WP_013983259.1	ExbD/TolR family protein	-
C6Y50_RS20155 (C6Y50_20160)	-	4257160..4257792 (-)	633	WP_013983260.1	MotA/TolQ/ExbB proton channel family protein	-
C6Y50_RS20160 (C6Y50_20165)	comA	4257864..4260089 (-)	2226	WP_106443470.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C6Y50_RS20165 (C6Y50_20170)	-	4260234..4260749 (+)	516	WP_011913748.1	DUF2062 domain-containing protein	-
C6Y50_RS20170 (C6Y50_20175)	-	4260762..4262006 (-)	1245	WP_106443585.1	lipoprotein-releasing ABC transporter permease subunit	-
C6Y50_RS20175 (C6Y50_20180)	lolD	4262006..4262704 (-)	699	WP_013983263.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
C6Y50_RS20180 (C6Y50_20185)	-	4262712..4263959 (-)	1248	WP_020307157.1	lipoprotein-releasing ABC transporter permease subunit	-
C6Y50_RS20185 (C6Y50_20190)	-	4263992..4264627 (+)	636	WP_011913752.1	PilZ domain-containing protein	-
C6Y50_RS20190 (C6Y50_20195)	-	4264631..4264939 (+)	309	WP_011913753.1	hypothetical protein	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80989.51 Da
• Isoelectric Point: 9.9660

>NTDB_id=278791 C6Y50_RS20160 WP_106443470.1 4257864..4260089(-) (comA) [Stutzerimonas stutzeri strain 1W1-1A]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRHRWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPQLQAGERWRLAARLKRPHGMVNPHAFDYEAWLLARRIGAT
GTIKAGERLTASAASDGWRDQLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFDVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWMALTRAQWAATLGLLPLLLALGLPVSASGPLANLLAVPWVSLTVPF
ALLGTLLLPLAGVGEALLSVVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGLLLLLP
LVFPPRVEVPDGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GADAVQRLLRVDRVVSGEPSRLAPDLGAERCESGSSWQWNDVRFSLWQWQMARDSNQQSCVLQIEANGERILLTGDIDQA
AERAWLASEQRTPSHWLLLPHHGSRSSSSEPFLRGVASHAALISRSLHNAFGHPHPSVVERLETLDIRAYDTALHGAIRI
ELGSFSPPQLQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=278791 C6Y50_RS20160 WP_106443470.1 4257864..4260089(-) (comA) [Stutzerimonas stutzeri strain 1W1-1A]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGTCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGCTGCTCCTGCTGCGTCACCGCTGGGTGGCGCCGGGCTTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTACCGGCGTCCATGGACGGTCGCACCTTTTGGATCGAG
GGGCGGGTAGTGGGGTTGCCCAGTCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCAGCTACAAGCCGGCGAGCGCTGGCGCCTGGCGGCGCGAC
TGAAGCGACCGCATGGCATGGTCAATCCCCACGCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGCATCGGCGCCACG
GGCACGATAAAGGCGGGCGAGCGCCTGACGGCGTCGGCGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGTTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGACAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGATGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGATTGCGCTTTCGCCATCTGGGTGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCTCTGGTGACATTGCAGCCGGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGCTCATGGCGCTGGTGGATGGCCCTGACCCGGGCGCAGTGGGCGGCCACCCTTGGTCTGCTTCCGCTGTTGCTGG
CCCTCGGATTGCCGGTAAGTGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTGACCGTGCCCTTT
GCGTTGCTCGGTACGCTCCTGCTGCCCCTGGCCGGGGTTGGCGAAGCGCTGCTGTCAGTGGTCGGCTATTCGCTGGCATT
GCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCAGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTATTGCCG
CTGGTATTCCCGCCTCGTGTGGAGGTGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTAGGGCAGGGCCTGGCGGT
GCTTGTACGCACTCGCGAGCATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGCGGGTGG
TCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTGAGTCATGCCGATAATGATCATTCGGGC
GGTGCGGACGCGGTTCAGCGGTTGCTGAGGGTTGATCGGGTGGTCAGTGGCGAGCCGTCGCGCCTTGCGCCTGATCTGGG
CGCCGAACGTTGCGAAAGCGGTAGCAGCTGGCAGTGGAACGATGTGCGCTTCAGTCTGTGGCAATGGCAGATGGCACGCG
ACAGCAATCAGCAGTCCTGCGTGCTGCAAATCGAGGCCAATGGTGAGCGGATCCTGCTCACCGGCGACATCGACCAGGCC
GCGGAGCGGGCATGGCTGGCAAGCGAACAGCGCACCCCATCGCACTGGCTGTTGCTGCCCCACCATGGCAGCCGCAGCTC
GTCGTCAGAACCGTTTCTGCGCGGCGTCGCCTCCCATGCCGCGCTGATCTCGCGCAGCCTGCACAATGCCTTCGGCCACC
CACACCCAAGCGTGGTCGAGCGGCTCGAGACCCTTGACATCCGGGCCTACGACACCGCCTTGCATGGCGCAATCCGCATA
GAGCTGGGAAGCTTTTCGCCTCCTCAGCTACAACGTTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-673)

• Competence protein (Competence) (201-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.087	96.356	0.646
comA	Ralstonia pseudosolanacearum GMI1000	36.761	100	0.386