Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C6Y50_RS03665 Genome accession   NZ_CP027664
Coordinates   767294..768886 (+) Length   530 a.a.
NCBI ID   WP_017244514.1    Uniprot ID   A0AA42TFA9
Organism   Stutzerimonas stutzeri strain 1W1-1A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 762294..773886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y50_RS03645 (C6Y50_03645) pgeF 764047..764784 (-) 738 WP_045159695.1 peptidoglycan editing factor PgeF -
  C6Y50_RS03650 (C6Y50_03650) rluD 764781..765755 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6Y50_RS03655 (C6Y50_03655) - 765960..766949 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  C6Y50_RS03660 (C6Y50_03660) - 767071..767304 (+) 234 WP_013984074.1 PP0621 family protein -
  C6Y50_RS03665 (C6Y50_03665) pilS 767294..768886 (+) 1593 WP_017244514.1 sensor histidine kinase Regulator
  C6Y50_RS03670 (C6Y50_03670) pilR 769017..770354 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  C6Y50_RS03675 (C6Y50_03675) - 770398..771456 (-) 1059 WP_011914666.1 DUF2333 family protein -
  C6Y50_RS03680 (C6Y50_03680) - 771674..773269 (+) 1596 WP_014597755.1 response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58858.93 Da        Isoelectric Point: 7.8561

>NTDB_id=278764 C6Y50_RS03665 WP_017244514.1 767294..768886(+) (pilS) [Stutzerimonas stutzeri strain 1W1-1A]
MGTENLTFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPERDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELLKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=278764 C6Y50_RS03665 WP_017244514.1 767294..768886(+) (pilS) [Stutzerimonas stutzeri strain 1W1-1A]
GTGGGCACTGAGAACCTCACCTTCCTCGGCGATCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAGCTGTTTCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCGAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTACCTGACCTTCTACCTGAGCATCAGCCGTTCCGAAGCCAGCAGCCAATACGTCCAGGCCGGTGCGCTCGGA
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTGCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGGGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGCCTCGCG
CCGCGCTGCCCGGAGCTGCTCAAGGCACTGCAGCACTGGCGTGGCAATCCTACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTGCAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAGCTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
GCTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAGCTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTCCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGGCCCGGCATCGCCGCCGAGCAGTTGCACAACGTTTTCGAACCC
TTCTTCACCACCGAGAGCAAAGGCACCGGGCTCGGGCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666

Multiple sequence alignment