Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C4901_RS05110 Genome accession   NZ_CP027663
Coordinates   974659..976023 (-) Length   454 a.a.
NCBI ID   WP_110136419.1    Uniprot ID   -
Organism   Acidiferrobacter sp. SPIII_3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 969659..981023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4901_RS05095 (C4901_05080) - 970316..970909 (+) 594 WP_145960624.1 hypothetical protein -
  C4901_RS05100 (C4901_05085) - 970911..973388 (+) 2478 WP_110136417.1 hypothetical protein -
  C4901_RS05105 (C4901_05090) - 973379..974332 (+) 954 WP_145960625.1 hypothetical protein -
  C4901_RS05110 (C4901_05095) pilR 974659..976023 (-) 1365 WP_110136419.1 sigma-54 dependent transcriptional regulator Regulator
  C4901_RS05115 (C4901_05100) - 976020..977672 (-) 1653 WP_110136420.1 PAS domain-containing sensor histidine kinase -
  C4901_RS05120 (C4901_05105) - 977713..977964 (-) 252 WP_205736198.1 PP0621 family protein -
  C4901_RS05130 (C4901_05115) ispB 978089..979087 (-) 999 WP_110136422.1 octaprenyl diphosphate synthase -
  C4901_RS05135 (C4901_05120) rplU 979292..979624 (+) 333 WP_110136423.1 50S ribosomal protein L21 -
  C4901_RS05140 (C4901_05125) rpmA 979634..979894 (+) 261 WP_110136424.1 50S ribosomal protein L27 -
  C4901_RS05145 (C4901_05130) cgtA 979937..980998 (+) 1062 WP_110136425.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49299.63 Da        Isoelectric Point: 5.9963

>NTDB_id=278748 C4901_RS05110 WP_110136419.1 974659..976023(-) (pilR) [Acidiferrobacter sp. SPIII_3]
MTIPQVLIIDDEADIRALLELTLGRMNIETRSAGDVVSAFALLEEYRFDLCLTDMRLPDGDGLAIVRHIEEHHRGLPVAV
ITAHGSMETAIAALKGGAFDFVCKPLNINELRALVRSALNLSKQAPSDGASAAAKLLGDSQAIREVRALIERLARGQAPV
YISGESGTGKELAARLIHDLGPRAGRPFVAVNCGAIPEQLMESEFFGHKKGSFTGAFNDKDGLFKTASGGTLFLDEVGDL
PVPMQVKLLRAIQEKAVRPVGSQLEVAVDVRILSATHKNLHDLVRTGAFRQDLYYRLNVIELVIPPLRERAEDIPALAAH
LAAKLSMGRPLPLTPAALATLKRYPFPGNVRELENIMERALTLCESGEIDVADLRLPGHDAQGLPGKVAESEASPFDTGD
YKGEQSLDEHLAQVERAAIEKALRDTNQNKTAAARELGITFRALRYKLEKLGIE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=278748 C4901_RS05110 WP_110136419.1 974659..976023(-) (pilR) [Acidiferrobacter sp. SPIII_3]
ATGACCATCCCCCAAGTCCTCATCATCGATGACGAAGCCGATATCCGCGCGCTGCTCGAGCTTACGCTCGGGCGCATGAA
CATCGAGACCCGCTCGGCCGGCGACGTGGTCTCGGCCTTCGCGCTGCTCGAGGAGTACCGGTTCGACCTGTGCCTCACGG
ACATGCGCCTGCCCGACGGCGACGGTCTGGCCATCGTCCGCCATATCGAGGAGCATCATCGCGGGCTACCGGTGGCGGTC
ATCACCGCCCATGGGAGCATGGAGACGGCCATCGCGGCATTGAAGGGCGGGGCCTTCGACTTCGTATGCAAACCGCTCAA
TATCAATGAATTACGGGCGCTCGTACGCAGCGCCCTGAACCTCTCGAAACAGGCGCCGAGCGACGGCGCGAGCGCCGCCG
CCAAACTTCTCGGTGATTCCCAGGCCATCCGCGAGGTCCGCGCCCTCATCGAGCGCCTAGCGCGCGGCCAGGCGCCCGTA
TATATCTCCGGGGAGTCCGGCACCGGCAAGGAGCTCGCCGCGCGTCTCATCCATGATCTCGGGCCCCGCGCCGGCCGCCC
GTTCGTGGCCGTCAACTGCGGGGCGATACCCGAGCAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCA
CCGGCGCCTTCAACGACAAGGACGGGCTATTCAAGACCGCAAGCGGGGGCACCTTGTTCCTAGATGAGGTCGGCGACCTG
CCGGTCCCCATGCAGGTGAAGCTCCTGCGCGCCATCCAGGAGAAGGCGGTGCGTCCGGTCGGCAGCCAGCTGGAAGTGGC
GGTGGACGTGCGCATCCTGTCGGCCACGCACAAAAACCTCCACGACCTGGTGCGCACCGGTGCGTTCCGCCAGGACCTCT
ACTACCGCCTGAACGTCATCGAGCTCGTGATCCCGCCGCTGCGCGAACGCGCCGAGGACATCCCGGCGCTTGCGGCGCAT
CTTGCCGCCAAACTGAGCATGGGTCGCCCCTTGCCACTCACCCCCGCGGCCTTGGCGACACTGAAGAGATATCCCTTCCC
CGGCAACGTCCGCGAACTCGAGAACATCATGGAACGGGCGCTGACCTTGTGCGAGAGCGGCGAGATCGATGTGGCGGACC
TGCGTCTGCCCGGGCACGATGCCCAGGGTCTACCTGGCAAAGTCGCCGAGTCGGAGGCCTCGCCCTTCGATACCGGTGAT
TACAAAGGGGAACAGTCGCTCGACGAGCACCTGGCCCAAGTCGAGCGCGCGGCGATCGAAAAGGCCCTGCGCGACACCAA
CCAGAACAAGACCGCCGCCGCCCGCGAGCTCGGCATCACCTTCCGCGCCCTGCGCTATAAGCTCGAAAAGCTCGGCATCG
AATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(411-451)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.087

100

0.61
  pilR Acinetobacter baumannii strain A118

47.021

100

0.487

Multiple sequence alignment