Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   C4901_RS02995 Genome accession   NZ_CP027663
Coordinates   571543..572976 (-) Length   477 a.a.
NCBI ID   WP_110136067.1    Uniprot ID   -
Organism   Acidiferrobacter sp. SPIII_3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566543..577976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4901_RS02965 (C4901_02960) ptsP 566731..568476 (-) 1746 WP_205736154.1 phosphoenolpyruvate--protein phosphotransferase -
  C4901_RS02970 (C4901_02965) - 568476..568745 (-) 270 WP_110136062.1 HPr family phosphocarrier protein -
  C4901_RS02975 (C4901_02970) - 568732..569136 (-) 405 WP_168185514.1 PTS sugar transporter subunit IIA -
  C4901_RS02980 (C4901_02975) rapZ 569254..570129 (-) 876 WP_110136064.1 RNase adapter RapZ -
  C4901_RS02985 (C4901_02980) hprK 570126..571073 (-) 948 WP_110136065.1 HPr(Ser) kinase/phosphatase -
  C4901_RS02990 (C4901_02985) hpf 571222..571521 (-) 300 WP_110136066.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  C4901_RS02995 (C4901_02990) rpoN/rpoN1 571543..572976 (-) 1434 WP_110136067.1 RNA polymerase factor sigma-54 Machinery gene
  C4901_RS03000 (C4901_02995) lptB 573029..573754 (-) 726 WP_110136068.1 LPS export ABC transporter ATP-binding protein -
  C4901_RS03005 (C4901_03000) lptA 573751..574257 (-) 507 WP_110136069.1 lipopolysaccharide transport periplasmic protein LptA -
  C4901_RS03010 (C4901_03005) lptC 574254..574688 (-) 435 WP_110136070.1 LPS export ABC transporter periplasmic protein LptC -
  C4901_RS03015 (C4901_03010) kdsC 574673..575245 (-) 573 WP_240611815.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  C4901_RS03020 (C4901_03015) - 575242..576243 (-) 1002 WP_110136071.1 KpsF/GutQ family sugar-phosphate isomerase -
  C4901_RS03025 (C4901_03020) - 576328..576765 (+) 438 WP_110136072.1 hypothetical protein -
  C4901_RS03030 (C4901_03025) - 576762..577499 (+) 738 WP_110136073.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53375.23 Da        Isoelectric Point: 5.0495

>NTDB_id=278746 C4901_RS02995 WP_110136067.1 571543..572976(-) (rpoN/rpoN1) [Acidiferrobacter sp. SPIII_3]
MKQTLDLRIGQHLTITPQLQQAIRLLQLSSIELEQEIREVLEKNPLLEEADHADGEEAAAEEPAEAVTADEVRDDGEGDA
DPAELDWEGDYEPAPSSSGSGDEDNDTNFEARNSRPTSLRDHLLWQLQMTPFSDRDRLVAIAIIDAIDEDGYFVGGVDDI
LATLPDMELAADEVEAVLHQVQNFDPVGVAARHLGECLDLQLRRLDPATPYRDAARLLTDPTHLKLLGQRDFKEIKRLTH
LDSETLGPAMALLKGLNPRPGSHVSTAPNAYVVPEILVKKRRGSWRADLNIAAMPRLRINNHYERMIQRGRGSAQDRFLH
DHLQEARWFLKSLQSRNETLLKVARVIVDRQRGFFDHGPEAMRPLVLHDVAGEVGMHESTVSRVTTNKYMMTPRGIFELK
YFFSSHVGTADGGTCSATAIRSLIRKIIEAEPPDRPISDSKIADLLLEQGINIARRTIAKYRESLSIPPSSQRKSLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=278746 C4901_RS02995 WP_110136067.1 571543..572976(-) (rpoN/rpoN1) [Acidiferrobacter sp. SPIII_3]
ATGAAACAGACACTCGACCTCAGAATCGGGCAACACCTCACCATCACGCCCCAACTGCAGCAGGCGATCCGCCTGCTGCA
GTTGTCGTCGATCGAGCTCGAGCAGGAGATACGCGAGGTCCTGGAGAAAAACCCGCTCCTGGAGGAGGCCGACCATGCCG
ACGGCGAAGAGGCGGCGGCCGAGGAACCGGCCGAGGCGGTGACCGCCGACGAGGTCCGGGACGATGGCGAGGGCGACGCG
GACCCCGCCGAACTCGACTGGGAGGGCGATTACGAGCCCGCGCCATCGAGTTCCGGCAGCGGCGATGAGGACAACGACAC
CAATTTCGAGGCGCGCAACAGCCGCCCGACGAGCCTTCGGGACCACCTCCTCTGGCAGCTGCAGATGACGCCGTTCTCGG
ATCGCGATCGGCTCGTGGCCATCGCCATCATCGACGCCATCGACGAAGACGGATATTTCGTGGGGGGCGTCGATGATATC
CTGGCGACCCTCCCGGACATGGAGCTCGCCGCCGACGAGGTCGAGGCGGTCTTGCACCAGGTCCAAAATTTCGATCCGGT
CGGGGTCGCGGCACGCCACCTGGGCGAATGCCTCGATCTGCAGCTCCGCCGCCTGGACCCGGCGACCCCCTACCGGGACG
CCGCGCGCCTGCTCACAGACCCCACGCACCTTAAACTTCTCGGGCAACGCGATTTCAAGGAAATCAAGCGCCTGACGCAC
CTCGACTCGGAGACACTGGGGCCGGCCATGGCCCTATTGAAGGGCCTGAACCCGCGGCCGGGATCGCATGTCTCGACGGC
CCCCAATGCCTACGTCGTGCCGGAGATCCTGGTGAAGAAGCGGCGCGGGAGCTGGCGCGCCGACCTCAACATAGCCGCCA
TGCCGAGGCTGCGCATCAACAACCACTATGAGCGCATGATACAACGCGGGCGTGGATCCGCGCAGGATCGCTTCCTGCAC
GATCATCTCCAGGAGGCGCGGTGGTTCCTAAAGAGCCTGCAAAGCCGCAATGAGACCCTGCTCAAGGTGGCGCGCGTCAT
TGTCGACCGCCAACGCGGCTTCTTTGATCATGGGCCGGAGGCCATGCGACCCCTGGTCTTGCATGACGTCGCAGGCGAGG
TCGGCATGCACGAATCCACGGTCTCGCGGGTCACGACCAACAAATACATGATGACGCCGCGTGGCATATTCGAGCTCAAA
TACTTCTTCTCGAGCCACGTCGGCACGGCCGACGGCGGAACCTGCTCGGCGACCGCCATCCGCTCGCTCATCCGCAAGAT
CATAGAGGCCGAGCCGCCCGACAGGCCCATAAGTGACAGCAAGATCGCCGATCTGCTCTTGGAGCAAGGCATCAATATCG
CCAGGAGGACCATCGCGAAATACCGGGAATCACTCAGCATCCCGCCGTCCAGTCAACGAAAATCGCTCGTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(109-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.276

100

0.482

Multiple sequence alignment