Detailed information NTG0278727

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C7A15_RS07275
• Genome accession: NZ_CP027658
• Coordinates: 1518020..1518880 (-)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain Ap-W20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1513020..1523880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7A15_RS07250 (C7A15_07295)	-	1513910..1515220 (+)	1311	WP_002114682.1	hypothetical protein	-
C7A15_RS07255 (C7A15_07300)	-	1515297..1515623 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
C7A15_RS07260 (C7A15_07305)	rlmB	1515726..1516475 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
C7A15_RS07265 (C7A15_07310)	-	1516511..1517425 (+)	915	WP_002115017.1	DMT family transporter	-
C7A15_RS07270 (C7A15_07315)	coaE	1517422..1518018 (-)	597	WP_002115011.1	dephospho-CoA kinase	-
C7A15_RS07275 (C7A15_07320)	pilD	1518020..1518880 (-)	861	WP_002114758.1	A24 family peptidase	Machinery gene
C7A15_RS07280 (C7A15_07325)	pilC	1518880..1520106 (-)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
C7A15_RS07285 (C7A15_07330)	pilB	1520133..1521845 (-)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C7A15_RS07290 (C7A15_07335)	tpiA	1522137..1522931 (+)	795	WP_002114826.1	triose-phosphate isomerase	-
C7A15_RS07295 (C7A15_07340)	secG	1522944..1523273 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=278727 C7A15_RS07275 WP_002114758.1 1518020..1518880(-) (pilD) [Acinetobacter pittii strain Ap-W20]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=278727 C7A15_RS07275 WP_002114758.1 1518020..1518880(-) (pilD) [Acinetobacter pittii strain Ap-W20]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGCTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437