Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C7A15_RS03670 Genome accession   NZ_CP027658
Coordinates   768417..769226 (-) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain Ap-W20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763417..774226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A15_RS03655 (C7A15_03680) pilE 763636..764061 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  C7A15_RS03660 (C7A15_03685) pilY2 764058..764540 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  C7A15_RS03665 (C7A15_03690) pilY1 764551..768405 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  C7A15_RS03670 (C7A15_03695) pilX 768417..769226 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7A15_RS03675 (C7A15_03700) pilW 769223..770224 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  C7A15_RS03680 (C7A15_03705) pilV 770224..770784 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  C7A15_RS03685 (C7A15_03710) fimU 770778..771251 (-) 474 WP_016802756.1 GspH/FimT family pseudopilin Machinery gene
  C7A15_RS03690 (C7A15_03715) ispH 771421..772371 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C7A15_RS03695 (C7A15_03720) gmk 772494..773123 (+) 630 WP_002116973.1 guanylate kinase -
  C7A15_RS03700 (C7A15_03725) rpoZ 773196..773474 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  C7A15_RS03705 (C7A15_03730) - 773513..773668 (+) 156 Protein_711 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=278707 C7A15_RS03670 WP_002117088.1 768417..769226(-) (pilX) [Acinetobacter pittii strain Ap-W20]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=278707 C7A15_RS03670 WP_002117088.1 768417..769226(-) (pilX) [Acinetobacter pittii strain Ap-W20]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment