Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPYM_RS07180 Genome accession   NC_009332
Coordinates   1410356..1411165 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes str. Manfredo     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405356..1416165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS07170 (SpyM51425) smc 1405681..1409220 (-) 3540 WP_011889080.1 chromosome segregation protein SMC -
  SPYM_RS07175 (SpyM51426) rnc 1409221..1409913 (-) 693 WP_002985639.1 ribonuclease III -
  SPYM_RS07180 (SpyM51427) vicX 1410356..1411165 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  SPYM_RS07185 (SpyM51428) vicK 1411169..1412521 (-) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPYM_RS07190 (SpyM51429) vicR 1412514..1413224 (-) 711 WP_002985645.1 response regulator YycF Regulator
  SPYM_RS07195 (SpyM51430) - 1413386..1414420 (-) 1035 WP_011184290.1 DUF3114 domain-containing protein -
  SPYM_RS07200 (SpyM51431) - 1414476..1415723 (-) 1248 WP_011284594.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=27869 SPYM_RS07180 WP_002985641.1 1410356..1411165(-) (vicX) [Streptococcus pyogenes str. Manfredo]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=27869 SPYM_RS07180 WP_002985641.1 1410356..1411165(-) (vicX) [Streptococcus pyogenes str. Manfredo]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTTAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCACATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment