Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6Q18_RS08720 Genome accession   NZ_CP027656
Coordinates   1928322..1928957 (+) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis subsp. piscium strain ZJU60     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1923322..1933957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Q18_RS08700 (C6Q18_08700) - 1923568..1924500 (+) 933 WP_025804356.1 ABC transporter ATP-binding protein -
  C6Q18_RS08705 (C6Q18_08705) - 1924497..1925276 (+) 780 WP_007931651.1 ABC transporter permease -
  C6Q18_RS08710 (C6Q18_08710) - 1925325..1925840 (-) 516 WP_025804355.1 DUF2062 domain-containing protein -
  C6Q18_RS08715 (C6Q18_08715) comA 1925988..1928219 (+) 2232 WP_106696835.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6Q18_RS08720 (C6Q18_08720) exbB 1928322..1928957 (+) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6Q18_RS08725 (C6Q18_08725) - 1928954..1929382 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  C6Q18_RS08730 (C6Q18_08730) lpxK 1929382..1930392 (+) 1011 WP_025804352.1 tetraacyldisaccharide 4'-kinase -
  C6Q18_RS08735 (C6Q18_08735) - 1930416..1930601 (+) 186 WP_007931663.1 Trm112 family protein -
  C6Q18_RS08740 (C6Q18_08740) kdsB 1930598..1931362 (+) 765 WP_102676842.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6Q18_RS08745 (C6Q18_08745) - 1931362..1931826 (+) 465 WP_106696836.1 low molecular weight protein-tyrosine-phosphatase -
  C6Q18_RS08750 (C6Q18_08750) murB 1931823..1932842 (+) 1020 WP_025804350.1 UDP-N-acetylmuramate dehydrogenase -
  C6Q18_RS08755 (C6Q18_08755) - 1933096..1933566 (+) 471 WP_106696837.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=278646 C6Q18_RS08720 WP_025804353.1 1928322..1928957(+) (exbB) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=278646 C6Q18_RS08720 WP_025804353.1 1928322..1928957(+) (exbB) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTATGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCCCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCGGCTGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATTGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment