Detailed information NTG0278645

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C6Q18_RS08715
• Genome accession: NZ_CP027656
• Coordinates: 1925988..1928219 (+)
• Length: 743 a.a.
• NCBI ID: WP_106696835.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ZJU60
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1920988..1933219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Q18_RS08690 (C6Q18_08690)	-	1922110..1922769 (+)	660	WP_106696833.1	transglutaminase-like domain-containing protein	-
C6Q18_RS08695 (C6Q18_08695)	-	1922812..1923435 (+)	624	WP_106696834.1	glutathione S-transferase family protein	-
C6Q18_RS08700 (C6Q18_08700)	-	1923568..1924500 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
C6Q18_RS08705 (C6Q18_08705)	-	1924497..1925276 (+)	780	WP_007931651.1	ABC transporter permease	-
C6Q18_RS08710 (C6Q18_08710)	-	1925325..1925840 (-)	516	WP_025804355.1	DUF2062 domain-containing protein	-
C6Q18_RS08715 (C6Q18_08715)	comA	1925988..1928219 (+)	2232	WP_106696835.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C6Q18_RS08720 (C6Q18_08720)	exbB	1928322..1928957 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C6Q18_RS08725 (C6Q18_08725)	-	1928954..1929382 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
C6Q18_RS08730 (C6Q18_08730)	lpxK	1929382..1930392 (+)	1011	WP_025804352.1	tetraacyldisaccharide 4'-kinase	-
C6Q18_RS08735 (C6Q18_08735)	-	1930416..1930601 (+)	186	WP_007931663.1	Trm112 family protein	-
C6Q18_RS08740 (C6Q18_08740)	kdsB	1930598..1931362 (+)	765	WP_102676842.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C6Q18_RS08745 (C6Q18_08745)	-	1931362..1931826 (+)	465	WP_106696836.1	low molecular weight protein-tyrosine-phosphatase	-
C6Q18_RS08750 (C6Q18_08750)	murB	1931823..1932842 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81421.57 Da
• Isoelectric Point: 10.0461

>NTDB_id=278645 C6Q18_RS08715 WP_106696835.1 1925988..1928219(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWVLDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAAMQESWRARIRQRLLQVDSHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGDRVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSLALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=278645 C6Q18_RS08715 WP_106696835.1 1925988..1928219(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGTGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGG
ACGGTCAAGGATGGGCAGCTTCTGGCCGCCATGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TTCCCATGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGTCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTAGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGACTCCGACCTGGGCGACCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCTGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624