Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IBB3154_RS02830 Genome accession   NZ_CP027644
Coordinates   590418..592085 (+) Length   555 a.a.
NCBI ID   WP_164479802.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain IBB3154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 585418..597085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB3154_RS02800 (IBB3154_0548) folD 585800..586657 (+) 858 WP_011475808.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  IBB3154_RS02805 (IBB3154_0549) xseA 586650..587990 (+) 1341 WP_003699846.1 exodeoxyribonuclease VII large subunit -
  IBB3154_RS02810 (IBB3154_0550) - 587990..588217 (+) 228 WP_081561326.1 exodeoxyribonuclease VII small subunit -
  IBB3154_RS02815 (IBB3154_0551) - 588183..589100 (+) 918 WP_180376181.1 polyprenyl synthetase family protein -
  IBB3154_RS02820 (IBB3154_0552) - 589103..589930 (+) 828 WP_081509248.1 TlyA family RNA methyltransferase -
  IBB3154_RS02825 (IBB3154_0553) - 589955..590413 (+) 459 WP_003699854.1 arginine repressor -
  IBB3154_RS02830 (IBB3154_0554) recN 590418..592085 (+) 1668 WP_164479802.1 DNA repair protein RecN Machinery gene
  IBB3154_RS02835 (IBB3154_0555) lexA 592149..592769 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  IBB3154_RS02840 (IBB3154_0556) - 592880..593170 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  IBB3154_RS02845 (IBB3154_0557) - 593297..593521 (+) 225 WP_003699860.1 YneF family protein -
  IBB3154_RS02850 (IBB3154_0558) yihA 593604..594194 (+) 591 WP_003709878.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  IBB3154_RS02855 (IBB3154_0559) - 594212..594511 (+) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  IBB3154_RS02860 (IBB3154_0560) - 594658..595947 (+) 1290 WP_003708871.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63236.03 Da        Isoelectric Point: 4.8501

>NTDB_id=278624 IBB3154_RS02830 WP_164479802.1 590418..592085(+) (recN) [Ligilactobacillus salivarius strain IBB3154]
MLQELSIRDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRIQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIVKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=278624 IBB3154_RS02830 WP_164479802.1 590418..592085(+) (recN) [Ligilactobacillus salivarius strain IBB3154]
ATGTTACAAGAATTATCAATAAGAGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAAACAGGTGCTGGTAAATCAATTATTATTGATGCCCTAGGTTTACTAGCAGGAGGTAGAGGTTCTACTGAAT
TCATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGTGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGACAGAATGAGC
ATCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAATTCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAAAAGGCCTGGGCTCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCCGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTGCATTATCATAGTAGAATTGTAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGTCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTGCCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.252

100

0.497

Multiple sequence alignment